List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 185046
identified by sequence similarity; putative; ORF located using
This group has 6 members: 6 [B]acteria
Fingerprint: GHNSEIV
| [B] Bacteroides fragilis | BACFR00344 | Q64ZI3 | similar to gp:AE016941_3 [Bacteroides thetaiotaomicron VPI-5482], percent identity 80 in 307 aa, BLASTP E(): e-154 arabinan endo-1,5-alpha-L-arabinosidase A precursor |
| [B] Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) | BACFN00288 | Q5LIF9 | Similar to Bacillus subtilis endo-arabinase SWALL:O07078 (EMBL:D85132) (324 aa) fasta scores: E(): 1.5e-20, 33.33% id in 312 aa, and to C-terminus of Bacteroides thetaiotaomicron arabinan endo-1,5-alpha-L-arabinosidase A precursor BT3516 SWALL:AAO78622 (EMBL:AE016941) (637 aa) fasta scores: E(): 2e-109, 80.78% id in 307 aa, and to Bacteroides thetaiotaomicron arabinan endo-1,5-alpha-L-arabinosidase A precursor BT2900 SWALL:AAO78006 (EMBL:AE016938) (325 aa) fasta scores: E(): 2.4e-100, 70.09% id in 321 aa putative exported endo-arabinase |
| [B] Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) | BACV802088 | A6L2H7 | Glycoside hydrolase family 43 |
| [B] Xanthomonas oryzae (pv. oryzae) | XANOR04064 | Q5GU29 | identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark xylosidase |
| [B] Xanthomonas oryzae pv. oryzae (strain MAFF 311018) | XANOM03945 | Q2NXE5 | conserved hypothetical protein identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker |
| [B] Xanthomonas oryzae pv. oryzae (strain PXO99A) | XANOP04459 | B2SU03 | Xylosidase |