List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 195820

Shikimate 5-dehydrogenase
This group has 22 members: 22 [B]acteria
Fingerprint: FAAWEIW

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Bacteroides fragilisBACFR00918  UniProtKB/TrEMBL Q64XV9  similar to gp:AE016944_71 [Bacteroides thetaiotaomicron VPI-5482], percent identity 87 in 248 aa, BLASTP E(): e-127 shikimate 5-dehydrogenase
[B] Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)BACFN00800  UniProtKB/TrEMBL Q5LH05  Similar to Staphylococcus epidermidis shikimate 5-dehydrogenase AroE or se1282 SWALL:Q8CP09 (EMBL:AE016748) (272 aa) fasta scores: E(): 5e-17, 29.96% id in 257 aa, and to Bacteroides thetaiotaomicron shikimate 5-dehydrogenase BT4215 SWALL:AAO79320 (EMBL:AE016944) (248 aa) fasta scores: E(): 3.9e-85, 88.3% id in 248 aa, and to Aquifex aeolicus shikimate 5-dehydrogenase AroE or AQ_901 SWALL:AROE_AQUAE (SWALL:O67049) (269 aa) fasta scores: E(): 6.3e-23, 38.76% id in 258 aa putative shikimate 5-dehydrogenase
[B] Bacteroides thetaiotaomicronBACTN04169  UniProtKB/TrEMBL Q8A006  Shikimate 5-dehydrogenase
[B] Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)PARD801918  UniProtKB/TrEMBL A6LDG0  Putative shikimate 5-dehydrogenase
[B] Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)PORG300915  UniProtKB/TrEMBL B2RJE8  Putative shikimate 5-dehydrogenase
[B] Gramella forsetii (strain KT0803)GRAFK00751  UniProtKB/TrEMBL A0LZE8  shikimate 5-dehydrogenase
[B] Staphylococcus aureus (strain MRSA252)STAAR01624  UniProtKB/Swiss-Prot AROE_STAAR  Similar to Escherichia coli shikimate 5-dehydrogenase AroE SW:AROE_ECOLI (P15770) (272 aa) fasta scores: E(): 5.7e-21, 34.409% id in 279 aa, and to Bacillus subtilis shikimate 5-dehydrogenase AroD SW:AROE_BACSU (P54374) (280 aa) fasta scores: E(): 1.5e-31, 37.956% id in 274 aa shikimate 5-dehydrogenase
[B] Clostridium botulinum (strain ATCC 19397 / Type A)CLOB102310  UniProtKB/Swiss-Prot AROE_CLOB1  Shikimate 5-dehydrogenase
[B] Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)CLOBH02539  UniProtKB/Swiss-Prot AROE_CLOBH  Putative shikimate 5-dehydrogenase
[B] Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)CLOBL02467  UniProtKB/Swiss-Prot AROE_CLOBL  Shikimate 5-dehydrogenase
[B] Clostridium botulinum (strain Loch Maree / Type A3)CLOBM02520  UniProtKB/Swiss-Prot AROE_CLOBM  Shikimate 5-dehydrogenase
[B] Clostridium botulinum (strain Okra / Type B1)CLOBK02457  UniProtKB/TrEMBL B1IIQ2  Shikimate 5-dehydrogenase
[B] Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)CLOK500751  UniProtKB/TrEMBL A5N6B2  AroE1
[B] Clostridium perfringensCLOPE00700  UniProtKB/Swiss-Prot AROE_CLOPE  Shikimate dehydrogenase
[B] Clostridium perfringens (strain ATCC 13124 / NCTC 8237)CLOP100668  UniProtKB/Swiss-Prot AROE_CLOP1  shikimate 5-dehydrogenase identified by similarity to SP:P54374; match to protein family HMM PF01488; match to protein family HMM TIGR00507
[B] Clostridium perfringens (strain SM101)CLOPS00661  UniProtKB/Swiss-Prot AROE_CLOPS  shikimate 5-dehydrogenase identified by similarity to SP:P54374; match to protein family HMM PF01488; match to protein family HMM TIGR00507
[B] Clostridium tetaniCLOTE00962  UniProtKB/TrEMBL Q895Z4  shikimate 5-dehydrogenase
[B] Streptococcus pyogenes (serotype M3)STRP300377  UniProtKB/TrEMBL Q8K8B1  best non-GAS blastp hit: gb|AAL81817.1| (AE010267) shikimate 5-dehydrogenase [Pyrococcus furiosus DSM 3638] putative shikimate 5-dehydrogenase
[B] Streptococcus pyogenes serotype M1STRP100128  UniProtKB/TrEMBL Q490A9  Shikimate 5-dehydrogenase
[B] Streptococcus pyogenes serotype M49 (strain NZ131)STRPZ00418  UniProtKB/TrEMBL B5XKC0  Shikimate 5-dehydrogenase
[B] Streptococcus pyogenes serotype M5 (strain Manfredo)STRPG01390  UniProtKB/TrEMBL A2RFW5  Putative shikimate 5-dehydrogenase
[B] Fusobacterium nucleatum subsp. nucleatumFUSNN00627  UniProtKB/TrEMBL Q8RH65  Shikimate 5-dehydrogenase