List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 267862

alanine dehydrogenase
This group has 8 members: 8 [B]acteria
Fingerprint: GAYYLEA

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Mycobacterium bovisMYCBO02794  UniProtKB/TrEMBL Q7TXW2  Mb2803, aldb, len: 239 aa. Equivalent to 3' end of Rv2780, len: 371 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 239 aa overlap). ald, secreted L-alanine dehydrogenase (EC 1.4.1.1) (40 kd antigen) (see first citations below); equivalent to Q9CBV6|ALD|ML1532 L-ALANINE DEHYDROGENASE from Mycobacterium leprae (371 aa), FASTA scores: opt: 2081, E(): 4e-115, (85.45% identity in 371 aa overlap). Also highly similar to others e.g. Q9S227|SCI51.13c from Streptomyces coelicolor (371 aa), FASTA scores: opt: 1575, E(): 2.3e-85, (66.05% identity in 371 aa overlap); Q9K827|BH3180 from Bacillus halodurans (371 aa), FASTA scores: opt: 1341, E(): 1.4e-71, (56.45% identity in 372 aa overlap); Q9RT70|DR1895 from Deinococcus radiodurans (390 aa), FASTA scores: opt: 1319, E(): 2.8e-70, (54.2% identity in 371 aa overlap); etc. Contains PS00836 and PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1 and 2. REMARK-M.bovis-M.tuberculosis: In Mycobacterium tuberculosis strain H37Rv, ald exists as a single gene. In Mycobacterium bovis, a frameshift due to a single base deletion (a-*) splits ald into 2 parts, alda and aldb. SECRETED L-ALANINE DEHYDROGENASE ALDb [SECOND PART] (40 KDA ANTIGEN) (TB43)
[B] Mycobacterium bovis (strain BCG / Paris 1173P2)MYCBP02771  UniProtKB/TrEMBL A1KMC3  Secreted l-alanine dehydrogenase aldb
[B] Staphylococcus aureus (strain Mu3 / ATCC 700698)STAA101412  UniProtKB/TrEMBL A7X2D0  Alanine dehydrogenase
[B] Staphylococcus aureus (strain Mu50 / ATCC 700699)STAAM01433  UniProtKB/Swiss-Prot DHA1_STAAM  alanine dehydrogenase
[B] Staphylococcus aureus (strain N315)STAAN01304  UniProtKB/Swiss-Prot DHA1_STAAN  alanine dehydrogenase
[B] Lactobacillus casei (strain ATCC 334)LACC302003  UniProtKB/TrEMBL Q036E3  Alanine dehydrogenase
[B] Lactobacillus casei (strain BL23)LACCB02250  UniProtKB/TrEMBL B3W9Q4  Alanine dehydrogenase 1
[B] Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)PEDPA00162  UniProtKB/TrEMBL Q03HP9  Alanine dehydrogenase