List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 25298
Peptide def
This group has 11 members: 11 [B]acteria
Fingerprint: FASQRTA
| [B] Frankia sp. (strain CcI3) | FRASC00013 | Q2JH34 | Peptide deformylase |
| [B] Phytoplasma sp. (strain STRAWB1) | STRAW03032 | DEF1_STRAW | Peptide deformylase 1 |
| [B] Streptomyces coelicolor | STRCO05191 | DEF4_STRCO | SC7E4.18, probable polypeptide deformylase, len: 216 aa; similar to SW:DEF_FREDI (EMBL:Y10305) Fremyella diplosiphon polypeptide deformylase (EC 3.5.1.31) Def, 187 aa; fasta scores: opt: 353 z-score: 430.0 E(): 1.8e-16; 33.8% identity in 145 aa overlap and to TR:Q9XAQ2 (EMBL:AL078618) Streptomyces coelicolor putative polypeptide deformylase SC10A7.23, 208 aa; fasta scores: opt: 680 z-score: 796.7 E(): 0; 59.8% identity in 169 aa overlap. Contains Pfam match to entry PF01327 Pep_deformylase, Polypeptide deformylase putative polypeptide deformylase |
| [B] Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) | STRGG02176 | B1W1A7 | Putative polypeptide deformylase |
| [B] Thermobifida fusca (strain YX) | THEFY01719 | Q47P58 | formylmethionine deformylase |
| [B] Bacillus pumilus (strain SAFR-032) | BACP201451 | A8FD37 | Formylmethionine deformylase |
| [B] Vibrio cholerae | VIBCH02876 | DEF2_VIBCH | similar to SP:P27251 GB:X77800 PID:41474 PID:443989 PID:471304; identified by sequence similarity; putative polypeptide deformylase |
| [B] Vibrio cholerae (strain ATCC 39541 / O395) | VIBC303762 | A5EYH1 | Polypeptide deformylase |
| [B] Vibrio cholerae serotype O1 (strain M66-2) | VIBCM02780 | C3LUH4 | |
| [B] Treponema pallidum | TREPA00752 | DEF_TREPA | similar to PID:1652560 percent identity: 44.83; identified by sequence similarity; putative polypeptide deformylase (def) |
| [B] Treponema pallidum subsp. pallidum (strain SS14) | TREPS00746 | DEF_TREPS | Polypeptide deformylase |