List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
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display and export options.
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The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
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OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 25298

Peptide def
This group has 11 members: 11 [B]acteria
Fingerprint: FASQRTA

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Frankia sp. (strain CcI3)FRASC00013  UniProtKB/TrEMBL Q2JH34  Peptide deformylase
[B] Phytoplasma sp. (strain STRAWB1)STRAW03032  UniProtKB/Swiss-Prot DEF1_STRAW  Peptide deformylase 1
[B] Streptomyces coelicolorSTRCO05191  UniProtKB/Swiss-Prot DEF4_STRCO  SC7E4.18, probable polypeptide deformylase, len: 216 aa; similar to SW:DEF_FREDI (EMBL:Y10305) Fremyella diplosiphon polypeptide deformylase (EC 3.5.1.31) Def, 187 aa; fasta scores: opt: 353 z-score: 430.0 E(): 1.8e-16; 33.8% identity in 145 aa overlap and to TR:Q9XAQ2 (EMBL:AL078618) Streptomyces coelicolor putative polypeptide deformylase SC10A7.23, 208 aa; fasta scores: opt: 680 z-score: 796.7 E(): 0; 59.8% identity in 169 aa overlap. Contains Pfam match to entry PF01327 Pep_deformylase, Polypeptide deformylase putative polypeptide deformylase
[B] Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)STRGG02176  UniProtKB/TrEMBL B1W1A7  Putative polypeptide deformylase
[B] Thermobifida fusca (strain YX)THEFY01719  UniProtKB/TrEMBL Q47P58  formylmethionine deformylase
[B] Bacillus pumilus (strain SAFR-032)BACP201451  UniProtKB/TrEMBL A8FD37  Formylmethionine deformylase
[B] Vibrio choleraeVIBCH02876  UniProtKB/Swiss-Prot DEF2_VIBCH  similar to SP:P27251 GB:X77800 PID:41474 PID:443989 PID:471304; identified by sequence similarity; putative polypeptide deformylase
[B] Vibrio cholerae (strain ATCC 39541 / O395)VIBC303762  UniProtKB/TrEMBL A5EYH1  Polypeptide deformylase
[B] Vibrio cholerae serotype O1 (strain M66-2)VIBCM02780  UniProtKB/TrEMBL C3LUH4  
[B] Treponema pallidumTREPA00752  UniProtKB/Swiss-Prot DEF_TREPA  similar to PID:1652560 percent identity: 44.83; identified by sequence similarity; putative polypeptide deformylase (def)
[B] Treponema pallidum subsp. pallidum (strain SS14)TREPS00746  UniProtKB/Swiss-Prot DEF_TREPS  Polypeptide deformylase