List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 3900

Alpha amylase
This group has 8 members: 8 [B]acteria
Fingerprint: FAPYNKG

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Cyanothece (strain ATCC 51142)CYAA500797  UniProtKB/TrEMBL B1WRW4  Putative alpha-glucanotransferase
[B] Anabaena variabilis (strain ATCC 29413 / PCC 7937)ANAVT04393  UniProtKB/TrEMBL Q3M4K9  Glycoside hydrolase, family 13-like
[B] Anabaena sp. (strain PCC 7120)ANASP00864  UniProtKB/TrEMBL Q44528  All0875 protein
[B] Nostoc punctiforme (strain ATCC 29133 / PCC 73102)NOSP700938  UniProtKB/TrEMBL B2IV81  Alpha amylase, catalytic region
[B] Maricaulis maris (strain MCS10)MARMM02719  UniProtKB/TrEMBL Q0AL25  Alpha amylase, catalytic region precursor
[B] Actinobacillus succinogenes (strain ATCC 55618 / 130Z)ACTSZ00315  UniProtKB/TrEMBL A6VL52  Alpha amylase catalytic region
[B] Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)THEP101125  UniProtKB/TrEMBL A5ILT2  Alpha amylase, catalytic region
[B] Thermotoga sp. (strain RQ2)THESQ01161  UniProtKB/TrEMBL B1LB25  Alpha amylase catalytic region