List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 78118

pectate lyase secreted protein
This group has 3 members: 1 [E]ukaryota 2 [B]acteria
Fingerprint: ETSENGM

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Aspergillus fumigatusASPFU09684  UniProtKB/TrEMBL Q4WC29  pectate lyase, putative
[B] Rhizobium etli (strain CFN 42 / ATCC 51251)RHIEC05125  UniProtKB/TrEMBL Q8KKZ2  pectate lyase secreted protein similar to hrpW [Erwinia amylovora]; similar to entrez-protein:CAA74158.1 Putative location:bacterial cytoplasm Psort-Score: 0.4414; go_component: extracellular [goid 0005576]; go_function: pectate lyase activity [goid 0030570]
[B] Rhizobium etli (strain CIAT 652)RHIE605815  UniProtKB/TrEMBL B3Q2A1  Pectate lyase secreted protein