List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 63389

LPS biosynthesis
This group has 6 members: 6 [A]rchaea
Fingerprint: LWALACG

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[A] Haloarcula marismortuiHALMA00157  UniProtKB/TrEMBL Q5V5F9  LPS biosynthesis protein
[A] Halobacterium salinariumHALSA00318  UniProtKB/TrEMBL Q9HS45  LPS biosynthesis
[A] Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)HALS300336  UniProtKB/TrEMBL B0R3B0  Putative glycosyltransferase, type 1
[A] Haloquadratum walsbyi (strain DSM 16790)HALWD00577  UniProtKB/TrEMBL Q18JW8  hexosyltransferase; glycosyltransferase
[A] Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)HALLT00574  UniProtKB/TrEMBL B9LTQ0  Glycosyl transferase group 1
[A] Natronomonas pharaonis (strain DSM 2160 / ATCC 35678)NATPD00735  UniProtKB/TrEMBL Q3ISQ6  hexosyltransferase homolog 3