List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 12036
L-RIBULOKINASE
This group has 11 members: 11 [B]acteria
Fingerprint: EATAYGT
| [B] Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) | CLAM300891 | A5CPB5 | Putative L-ribulokinase |
| [B] Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) | CLAMS00124 | B0RIE1 | Ribulokinase |
| [B] Nocardioides sp. (strain BAA-499 / JS614) | NOCSJ00372 | A1SDN8 | L-ribulokinase |
| [B] Bacillus amyloliquefaciens (strain FZB42) | BACA202494 | A7Z7G7 | AraB |
| [B] Bacillus licheniformis (strain DSM 13 / ATCC 14580) | BACLD02877 | ARAB_BACLD | InterProMatches:IPR005929; Molecular Function: ribulokinase activity (GO:0008741), Biological Process: L-arabinose catabolism (GO:0019572) L-ribulokinase |
| [B] Bacillus subtilis | BACSU02877 | ARAB_BACSU | Ribulokinase |
| [B] Geobacillus kaustophilus | GEOKA01888 | ARAB_GEOKA | L-ribulokinase |
| [B] Anaerocellum thermophilum (strain DSM 6725 / Z-1320) | ANATD02118 | B9MMK2 | L-ribulokinase |
| [B] Clostridium botulinum (strain Eklund 17B / type B) | CLOBB02874 | B2TPI4 | L-ribulokinase |
| [B] Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) | CALS800647 | A4XHF5 | Ribulokinase |
| [B] Rhodopirellula baltica | RHOBA04841 | Q7UMJ6 | PMID: 9084180 best DB hits: BLAST: swissprot:P94524; ARAB_BACSU L-RIBULOKINASE ----- pir: D69587; E=3e-97 gb:AAD45717.1; AF160811_5 (AF160811) L-ribulokinase [Bacillus; E=3e-96 embl:CAA61586.1; (X89408) L-ribulokinase [Bacillus subtilis]; E=6e-96 COG: BS_araB; COG1069 Ribulose kinase; E=3e-98 TM0284; COG1070 Sugar (pentulose and hexulose) kinases; E=1e-14 TM1430; COG0554 Glycerol kinase; E=7e-06 PFAM: PF00370; FGGY family of carbohydrate kinas; E=7.8e-06 PF01869; BadF/BadG/BcrA/BcrD ATPase family; E=0.0012 PF02782; FGGY family of carbohydrate kinas; E=1.4e-16 L-ribulokinase |