List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 215599
Transaldolase
This group has 8 members: 8 [B]acteria
Fingerprint: PRLAHNT
| [B] Phytoplasma sp. (strain STRAWB1) | STRAW06310 | TAL2_STRAW | Transaldolase 2 |
| [B] Streptomyces coelicolor | STRCO01918 | TAL2_STRCO | SCC22.18, tal2, probable transaldolase, len: 372aa; similar to many both prokaryote and eukaryote egs. TR:O88018 (EMBL:AL031107) tal, transaldolase from Streptomyces coelicolor (381 aa) fasta scores; opt: 1699, z-score: 1924.8, E(): 0, (72.0% identity in 361 aa overlap) and TR:O04894 (EMBL:U95923) transaldolase from Solanum tuberosum (potato) (438 aa) fasta scores; opt: 978, z-score: 1109.7, E(): 0, (48.0% identity in 358 aa overlap). Contains Pfam match to entry PF00923 Transaldolase, Transaldolase and Prosite match to PS01054 Transaldolase signature 1. putative transaldolase |
| [B] Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) | STRGG05460 | B1W106 | Putative transaldolase |
| [B] Rhodopirellula baltica | RHOBA01685 | Q7UUN2 | PMID: 8616240 best DB hits: BLAST: pir:T36008; probable transaldolase - Streptomyces coelicolor -----; E=7e-21 swissprot:O06812; TAL_MYCTU TRANSALDOLASE ----- pir: C70917; E=3e-17 pir:T48589; transaldolase-like protein - Arabidopsis thaliana; E=3e-17 COG: Rv1448c; COG0176 Transaldolase; E=3e-18 PFAM: PF00923; Transaldolase; E=0.78 transaldolase |
| [B] Campylobacter jejuni | CAMJE00253 | TAL_CAMJE | Transaldolase |
| [B] Campylobacter jejuni (strain RM1221) | CAMJR00320 | TAL_CAMJR | identified by match to protein family HMM PF00923; match to protein family HMM TIGR00876 transaldolase |
| [B] Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) | CAMLR01314 | B9KDP3 | Transaldolase |
| [B] Marinomonas sp. (strain MWYL1) | MARMS01919 | A6VWP8 | Transaldolase |