List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
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The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
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OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 226747

NADH-ubiquinone/plastoquinone oxidoreductase chain 3
This group has 22 members: 1 [E]ukaryota 1 [A]rchaea 20 [B]acteria
Fingerprint: DWVRPTP

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Populus trichocarpaPOPTR37527  UniProtKB/Swiss-Prot NU3C_POPTR  jgi|Poptr1_1|790702|fgenesh4_pg.C_scaffold_1448000001
[A] Natronomonas pharaonis (strain DSM 2160 / ATCC 35678)NATPD01137  UniProtKB/TrEMBL Q3IRK6  NADH dehydrogenase-like complex, subunit A
[B] Chlorobaculum parvum (strain NCIB 8327)CHLP801283  UniProtKB/Swiss-Prot NUOA_CHLP8  NADH-ubiquinone/plastoquinone oxidoreductase chain 3
[B] Chlorobium tepidumCHLTE00754  UniProtKB/Swiss-Prot NUOA_CHLTE  NADH-quinone oxidoreductase subunit A
[B] Chlorobium chlorochromatii (strain CaD3)CHLCH00625  UniProtKB/Swiss-Prot NUOA_CHLCH  NADH dehydrogenase I, subunit 3
[B] Chlorobium limicola (strain DSM 245 / NBRC 103803)CHLL200810  UniProtKB/Swiss-Prot NUOA_CHLL2  NADH-ubiquinone/plastoquinone oxidoreductase chain 3
[B] Chlorobium phaeobacteroides (strain BS1)CHLPB01518  UniProtKB/Swiss-Prot NUOA_CHLPB  NADH-ubiquinone/plastoquinone oxidoreductase chain 3
[B] Prosthecochloris vibrioformis (strain DSM 265)PROVI01075  UniProtKB/Swiss-Prot NUOA_PROVI  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KEGG: plt:Plut_0743 NADH dehydrogenase I, subunit 3
[B] Chloroherpeton thalassium (strain ATCC 35110 / GB-78)CHLT302540  UniProtKB/Swiss-Prot NUOA2_CHLT3  NADH-ubiquinone/plastoquinone oxidoreductase chain 3
[B] Pelodictyon luteolum (strain DSM 273)PELLD00724  UniProtKB/Swiss-Prot NUOA_PELLD  NADH dehydrogenase I, subunit 3
[B] Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1)PELPB01722  UniProtKB/Swiss-Prot NUOA_PELPB  NADH-ubiquinone/plastoquinone oxidoreductase chain 3
[B] Prosthecochloris aestuarii (strain DSM 271 / SK 413)PROA200819  UniProtKB/Swiss-Prot NUOA_PROA2  NADH-ubiquinone/plastoquinone oxidoreductase chain 3
[B] Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)SYNP202701  UniProtKB/Swiss-Prot NU3C_SYNP2  NADH dehydrogenase subunit C
[B] Synechococcus sp. (strain PCC 6301)SYNP600368  UniProtKB/Swiss-Prot NU3C_SYNP6  NADH dehydrogenase subunit 3
[B] Synechocystis sp. (strain PCC 6803)SYNY301687  UniProtKB/Swiss-Prot NU3C_SYNY3  NAD(P)H-quinone oxidoreductase subunit 3
[B] Nostoc punctiforme (strain ATCC 29133 / PCC 73102)NOSP704961  UniProtKB/Swiss-Prot NU3C_NOSP7  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
[B] Heliobacterium modesticaldum (strain ATCC 51547 / Ice1)HELMI02063  UniProtKB/Swiss-Prot NUOA_HELMI  NADH-quinone oxidoreductase subunit
[B] Moorella thermoacetica (strain ATCC 39073)MOOTA00937  UniProtKB/Swiss-Prot NUOA_MOOTA  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
[B] Sinorhizobium medicae (strain WSM419)SINMW03553  UniProtKB/TrEMBL A6UFK7  NADH-ubiquinone/plastoquinone oxidoreductase chain 3 precursor
[B] Anaeromyxobacter dehalogenans (strain 2CP-C)ANADE02561  UniProtKB/TrEMBL Q2IL10  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
[B] Anaeromyxobacter sp. (strain Fw109-5)ANADF01277  UniProtKB/TrEMBL A7H9V1  NADH-quinone oxidoreductase subunit
[B] Anaeromyxobacter sp. (strain K)ANASK01265  UniProtKB/TrEMBL B4UIA5  NADH-ubiquinone/plastoquinone oxidoreductase chain 3