List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 346261

PF02012; match to protein family
This group has 9 members: 9 [B]acteria
Fingerprint: DWMKFLG

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Clostridium perfringensCLOPE00725  UniProtKB/TrEMBL Q8XMG4  Exo-alpha-sialidase
[B] Clostridium perfringens (strain ATCC 13124 / NCTC 8237)CLOP100696  UniProtKB/TrEMBL Q0TT67  putative exo-alpha-sialidase identified by similarity to SP:Q54727; match to protein family HMM PF02012; match to protein family HMM PF02973
[B] Streptococcus pneumoniae (strain ATCC BAA-255 / R6)STRR601527  UniProtKB/Swiss-Prot NANA_STRR6  Sialidase A precursor (neuraminidase A)
[B] Streptococcus pneumoniae (strain CGSP14)STRPS01649  UniProtKB/TrEMBL B2IRU8  Sialidase A
[B] Streptococcus pneumoniae (strain Hungary19A-6)STRPI01632  UniProtKB/TrEMBL B1I751  Neuraminidase
[B] Streptococcus pneumoniae (strain JJA)STRZJ01504  UniProtKB/TrEMBL C1CFR2  Neuraminidase
[B] Streptococcus pneumoniae (strain P1031)STRZP01565  UniProtKB/TrEMBL C1CM30  Neuraminidase
[B] Streptococcus pneumoniae serotype 19F (strain G54)STRP401571  UniProtKB/TrEMBL B5E741  Neuraminidase A
[B] Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)STRP201424  UniProtKB/TrEMBL Q04J78  sialidase A precursor equivalent gene in S.pneumoniae R6 = spr1536; identified by match to protein family HMM PF02012; match to protein family HMM PF02973; match to protein family HMM TIGR01167