List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 228378

dioxygenase
This group has 18 members: 18 [B]acteria
Fingerprint: DIFAGER

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)MYCA904333  UniProtKB/TrEMBL B1MJT1  Hypothetical biphenyl dioxygenase beta subunit
[B] Mycobacterium sp. (strain KMS)MYCSK05717  UniProtKB/TrEMBL A1UQB2  aromatic-ring-hydroxylating dioxygenase, beta subunit PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit KEGG: mmc:Mmcs_5449 aromatic-ring-hydroxylating dioxygenase, beta subunit
[B] Mycobacterium sp. (strain MCS)MYCSS05400  UniProtKB/TrEMBL Q1B0N5  Aromatic-ring-hydroxylating dioxygenase, beta subunit
[B] Rhodococcus opacus (strain B4)RHOOB07970  UniProtKB/TrEMBL Q588I8  Benzene dioxygenase small subunit
[B] Rhodococcus sp. (strain RHA1)RHOSR07237  UniProtKB/TrEMBL Q53123  Biphenyl dioxygenase
[B] Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)SPHWW00883  UniProtKB/TrEMBL A5V4P0  Aromatic-ring-hydroxylating dioxygenase, beta subunit
[B] Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)BORPD03668  UniProtKB/TrEMBL A9I2P3  Chlorobenzene dioxygenase, small subunit of terminal oxygenase
[B] Burkholderia xenovorans (strain LB400)BURXL08407  UniProtKB/Swiss-Prot BPHE_BURXL  Biphenyl dioxygenase subunit beta
[B] Polaromonas naphthalenivorans (strain CJ2)POLNA04064  UniProtKB/TrEMBL A1VUW0  Benzene 1,2-dioxygenase
[B] Dechloromonas aromatica (strain RCB)DECAR03194  UniProtKB/TrEMBL Q47B06  Aromatic-ring-hydroxylating dioxygenase, beta subunit
[B] Escherichia coli (strain 55989 / EAEC)ECO5502735  UniProtKB/Swiss-Prot HCAF_ECO55  3-phenylpropionate dioxygenase, small (Beta) subunit
[B] Escherichia coli (strain DH10B)ECODH02394  UniProtKB/Swiss-Prot HCAF_ECODH  3-phenylpropionate dioxygenase, small (Beta) subunit
[B] Escherichia coli (strain K12)ECOLI02466  UniProtKB/Swiss-Prot HCAF_ECOLI  3-phenylpropionate/cinnamic acid dioxygenase subunit beta
[B] Escherichia coli (strain SE11)ECOSE02809  UniProtKB/Swiss-Prot HCAF_ECOSE  3-phenylpropionate dioxygenase beta subunit
[B] Escherichia coli O139:H28 (strain E24377A / ETEC)ECO2402664  UniProtKB/Swiss-Prot HCAF_ECO24  3-phenylpropionate dioxygenase, beta subunit
[B] Shigella flexneri serotype 5b (strain 8401)SHIF802196  UniProtKB/Swiss-Prot HCAF_SHIF8  small terminal subunit of phenylpropionate dioxygenase Code: Q; COG: COG5517
[B] Shigella sonnei (strain Ss046)SHISS02176  UniProtKB/Swiss-Prot HCAF_SHISS  Code: Q; COG: COG5517 small terminal subunit of phenylpropionate dioxygenase
[B] Pseudomonas putida (strain F1 / ATCC 700007)PSEP102829  UniProtKB/Swiss-Prot BNZB_PSEP1  Benzene 1,2-dioxygenase subunit beta