List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 353507

Exopolygalacturonate lyase
This group has 8 members: 8 [B]acteria
Fingerprint: DGFTDNF

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Enterobacter sp. (strain 638)ENT3804095  UniProtKB/TrEMBL A4WGF7  Pectate disaccharide-lyase precursor
[B] Escherichia coli O6ECOL600301  UniProtKB/TrEMBL Q8FKS2  Putative exopolygalacturonate lyase
[B] Erwinia carotovora (subsp. atroseptica)ERWCT04465  UniProtKB/TrEMBL Q6CYJ7  Similar to Erwinia chrysanthemi exopolygalacturonate lyase PelX SWALL:Q9Z5P8 (EMBL:Y16797) (734 aa) fasta scores: E(): 1.9e-206, 73.8% id in 733 aa, and to Erwinia chrysanthemi pectate disaccharide-lyase precursor PelX SWALL:PELX_ERWCH (SWALL:P22751) (749 aa) fasta scores: E(): 2.8e-195, 74.16% id in 689 aa exopolygalacturonate lyase
[B] Actinobacillus succinogenes (strain ATCC 55618 / 130Z)ACTSZ01444  UniProtKB/TrEMBL A6VPD1  Putative uncharacterized protein precursor
[B] Mannheimia succiniciproducens (strain MBEL55E)MANSM01736  UniProtKB/TrEMBL Q65RR1  Hypothetical protein
[B] Photobacterium profundumPHOPR04885  UniProtKB/TrEMBL Q6LGJ5  hypothetical exopolygalacturonate lyase
[B] Vibrio parahaemolyticusVIBPA03160  UniProtKB/TrEMBL Q87K12  similar to EMB:CAB39324.1 (Y16797) percent identity 44 in 711 aa putative exopolygalacturonate lyase
[B] Vibrio vulnificus (strain YJ016)VIBVY04601  UniProtKB/TrEMBL Q7MCK6  Exopolygalacturonate lyase