List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 411074
bifunctional protein
This group has 2 members: 2 [B]acteria
Fingerprint: DERPANS
| [B] Saccharopolyspora erythraea (strain NRRL 23338) | SACEN05666 | A4FLZ6 | Bifunctional protein |
| [B] Streptomyces coelicolor | STRCO01045 | Q9K438 | SCG22.07, probable bifunctional protein (secreted sugar binding protein/sugar hydrolase), len: 555 aa; N-terminal domain similar to N-terminal domain of TR:O86727 (EMBL:AL031515) Streptomyces coelicolor putative secreted cellulase SC5C7.30c, 890 aa; blastp scores: Score = 84 (29.6 bits), Expect = 0.031, Sum P(3) = 0.030 Identities = 61/233 (26%), Positives = 89/233 (38%) and C-terminal domain similar to C-terminal domain of SW:E13B_OERXA (EMBL:AF052745) Oerskovia xanthineolytica glucan enco-1,3-glucosidase precursor (EC 3.2.1.39), 548 aa; fasta scores: opt: 368 Z-score: 394.8 E(): 2.3e-14; 41.447% identity) in 152 aa overlap. Contains 3x Pfam match to entry PF02012 BNR, BNR repeat and Pfam match to entry PF00652 Ricin_B_lectin, Similarity to lectin domain of ricin beta-chain, 3 copies. Contains also possible N-terminal region signal peptide sequence putative bifunctional protein (secreted sugar binding protein/sugar hydrolase) |