List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 196541

Putative chitosanase
This group has 2 members: 2 [B]acteria
Fingerprint: CTGTHDL

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Phytoplasma sp. (strain STRAWB1)STRAW06187  UniProtKB/TrEMBL Q82A68  Putative chitosanase, secreted
[B] Streptomyces coelicolorSTRCO02006  UniProtKB/TrEMBL Q9S2Z1  SC3A3.02, probable chitosanase (putative secreted protein), len: 305 aa; similar to chitosanases e.g. SW:CHIS_STRSQ (EMBL:L07779), csn, Streptomyces sp. (strain N174) chitosanase precursor (278 aa), fasta scores; opt: 893 z-score: 1036.3 E(): 0, 58.4% identity in 233 aa overlap. Has an approx. 70 aa N-terminal extension not present in homologues which includes a possible N-terminal signal sequence. Contains Pfam match to entry PF01374 Glyco_hydro_46, Glycosyl hydrolase family 46 putative chitosanase (putative secreted protein)