List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.

Keyword Protein Sequence Group Entry

OMA Group 306058

Crossover junction endodeoxyribonuclease ruvC
This group has 91 members: 91 [B]acteria
Fingerprint: ARGACIT

Protein List | Alignment | Close Groups | Ontology Download: download fasta, download darwin

[B] Caulobacter sp. (strain K31)CAUSK00757  UniProtKB/Swiss-Prot RUVC_CAUSK  Crossover junction endodeoxyribonuclease RuvC
[B] Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087)PARBH00429  UniProtKB/TrEMBL E0TCL9  Holliday junction resolvase
[B] Bartonella clarridgeiae (strain CIP 104772 / 73)BARC701197  UniProtKB/TrEMBL E6YJ63  Holliday junction nuclease ruvC
[B] Bartonella vinsonii subsp. berkhoffii (strain Winnie)BARVW01249  UniProtKB/TrEMBL M1P409  Holliday junction resolvase ruvC
[B] Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)BEII900004  UniProtKB/Swiss-Prot RUVC_BEII9  Crossover junction endodeoxyribonuclease RuvC
[B] Nitrobacter hamburgensis (strain X14 / DSM 10229)NITHX03289   ABE64252.1  crossover junction endodeoxyribonuclease RuvC
[B] Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)NITWN02575  UniProtKB/Swiss-Prot RUVC_NITWN  crossover junction endodeoxyribonuclease RuvC
[B] Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)OLICO03253  UniProtKB/Swiss-Prot RUVC_OLICO  Crossover junction endodeoxyribonuclease ruvC
[B] Oligotropha carboxidovorans (strain OM4)OLICM00796  UniProtKB/TrEMBL F8BM31  holliday junction DNA nuclease RuvC
[B] Rhodopseudomonas palustris (strain BisA53)RHOP504701  UniProtKB/Swiss-Prot RUVC_RHOP5  crossover junction endodeoxyribonuclease RuvC TIGRFAM: crossover junction endodeoxyribonuclease RuvC PFAM: Crossover junction endodeoxyribonuclease RuvC KEGG: rpd:RPD_4170 crossover junction endodeoxyribonuclease RuvC
[B] Brucella abortus (strain S19)BRUA101518  UniProtKB/Swiss-Prot RUVC_BRUA1  Crossover junction endodeoxyribonuclease RuvC
[B] Brucella abortus biovar 1 (strain 9-941)BRUAB01577  UniProtKB/Swiss-Prot RUVC_BRUAB  similar to BR1704, crossover junction endodeoxyribonuclease RuvC RuvC, crossover junction endodeoxyribonuclease
[B] Brucella canis (strain ATCC 23365 / NCTC 10854)BRUC201631  UniProtKB/Swiss-Prot RUVC_BRUC2  Crossover junction endodeoxyribonuclease RuvC
[B] Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2)PELHB02416  UniProtKB/TrEMBL G4R987  crossover junction endodeoxyribonuclease RuvC
[B] Methylobacterium extorquens (strain CM4 / NCIMB 13688)METC400869  UniProtKB/Swiss-Prot RUVC_METC4  crossover junction endodeoxyribonuclease RuvC KEGG: mex:Mext_0962 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC
[B] Methylobacterium extorquens (strain PA1)METEP00934  UniProtKB/Swiss-Prot RUVC_METEP  Crossover junction endodeoxyribonuclease RuvC
[B] Methylobacterium sp. (strain 4-46)METS402182  UniProtKB/TrEMBL B0UFQ3  Crossover junction endodeoxyribonuclease RuvC
[B] Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271)MESCW01267  UniProtKB/TrEMBL E8TMZ9  
[B] Rhizobium loti (strain MAFF303099)RHILO03010  UniProtKB/Swiss-Prot RUVC_RHILO  RuvC ; Holliday junction nuclease
[B] Agrobacterium sp. (strain H13-3)AGRSH03821  UniProtKB/TrEMBL F0LCL9  crossover junction endodeoxyribonuclease RuvC endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvasome, endonuclease subunit
[B] Agrobacterium radiobacter (strain K84 / ATCC BAA-868)AGRRK02796  UniProtKB/Swiss-Prot RUVC_AGRRK  Crossover junction endodeoxyribonuclease RuvC
[B] Sinorhizobium medicae (strain WSM419)SINMW02587  UniProtKB/Swiss-Prot RUVC_SINMW  Crossover junction endodeoxyribonuclease RuvC
[B] Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)AZOC500510  UniProtKB/Swiss-Prot RUVC_AZOC5  Crossover junction endodeoxyribonuclease
[B] Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)STAND02980  UniProtKB/TrEMBL D7A793  crossover junction endodeoxyribonuclease RuvC TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: azc:AZC_0513 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC
[B] Maricaulis maris (strain MCS10)MARMM02418  UniProtKB/Swiss-Prot RUVC_MARMM  Crossover junction endodeoxyribonuclease RuvC
[B] Dinoroseobacter shibae (strain DFL 12)DINSH01088  UniProtKB/Swiss-Prot RUVC_DINSH  Crossover junction endodeoxyribonuclease RuvC
[B] Jannaschia sp. (strain CCS1)JANSC00962  UniProtKB/TrEMBL Q28TT1  crossover junction endodeoxyribonuclease RuvC
[B] Ketogulonicigenium vulgare (strain Y25)KETVY02049  UniProtKB/TrEMBL E3F372  crossover junction endodeoxyribonuclease RuvC
[B] Paracoccus denitrificans (strain Pd 1222)PARDP00676  UniProtKB/Swiss-Prot RUVC_PARDP  crossover junction endodeoxyribonuclease RuvC TIGRFAM: crossover junction endodeoxyribonuclease RuvC PFAM: Crossover junction endodeoxyribonuclease RuvC KEGG: rsp:RSP_0556 Holliday junction resolvase
[B] Pseudovibrio sp. (strain FO-BEG1)PSEUV04663  UniProtKB/TrEMBL G8PJY7  Crossover junction endodeoxyribonuclease RuvC
[B] Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)RHOCB03165  UniProtKB/TrEMBL D5ARD5  Crossover junction endodeoxyribonuclease ruvC
[B] Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)SILPO03034  UniProtKB/TrEMBL Q5LNT6  identified by match to protein family HMM PF02075; match to protein family HMM TIGR00228 crossover junction endodeoxyribonuclease RuvC
[B] Silicibacter sp. (strain TM1040)SILST02364   ABF65105.1  crossover junction endodeoxyribonuclease RuvC TIGRFAM: crossover junction endodeoxyribonuclease RuvC: (1.6e-51) PFAM: Crossover junction endodeoxyribonuclease RuvC: (5.7e-56) KEGG: sil:SPO3117 crossover junction endodeoxyribonuclease RuvC, ev=4e-79, 86% identity
[B] Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153)ACEP302463  UniProtKB/TrEMBL C7JGY9  Holliday junction resolvase RuvC
[B] Tistrella mobilis (strain KA081020-065)TISMK00895  UniProtKB/TrEMBL I3TIZ9  crossover junction endodeoxyribonuclease
[B] Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas)EHRCR00026  UniProtKB/Swiss-Prot RUVC_EHRCR  crossover junction endodeoxyribonuclease RuvC identified by similarity to SP:P24239; match to protein family HMM PF02075; match to protein family HMM TIGR00228
[B] Neorickettsia risticii (strain Illinois)NEORI00878  UniProtKB/TrEMBL C6V660  Crossover junction endodeoxyribonuclease RuvC
[B] Neorickettsia sennetsu (strain Miyayama)NEOSM00914  UniProtKB/Swiss-Prot RUVC_NEOSM  crossover junction endodeoxyribonuclease RuvC identified by match to protein family HMM PF02075
[B] Wolbachia sp. subsp. Brugia malayi (strain TRS)WOLTR00692  UniProtKB/Swiss-Prot RUVC_WOLTR  Holliday junction resolvasome, endonuclease subunit, RuvC
[B] Midichloria mitochondrii (strain IricVA)MIDMI00206  UniProtKB/TrEMBL F7XV40  crossover junction endodeoxyribonuclease RuvC
[B] Orientia tsutsugamushi (strain Boryong)ORITB01319   CAM80733.1  Crossover junction endodeoxyribonuclease
[B] Rickettsia akari (strain Hartford)RICAH00169  UniProtKB/Swiss-Prot RUVC_RICAH  Crossover junction endodeoxyribonuclease ruvC
[B] Rickettsia bellii (strain OSU 85-389)RICB800247  UniProtKB/Swiss-Prot RUVC_RICB8  Crossover junction endodeoxyribonuclease ruvC
[B] Rickettsia peacockii (strain Rustic)RICPU00484  UniProtKB/Swiss-Prot RUVC_RICPU  Crossover junction endodeoxyribonuclease ruvC
[B] Rickettsia prowazekii (strain Rp22)RICPP00114  UniProtKB/TrEMBL D5AW38  Crossover junction endodeoxyribonuclease RuvC
[B] Rickettsia rickettsii (strain Iowa)RICRO00180  UniProtKB/Swiss-Prot RUVC_RICRO  crossover junction endodeoxyribonuclease
[B] Rickettsia typhi (strain ATCC VR-144 / Wilmington)RICTY00015  UniProtKB/Swiss-Prot RUVC_RICTY  Crossover junction endodeoxyribonuclease ruvC
[B] Erythrobacter litoralis (strain HTCC2594)ERYLH02892  UniProtKB/Swiss-Prot RUVC_ERYLH  Holliday junction resolvase COG0817 Holliday junction resolvasome, endonuclease subunit
[B] Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256)SPHAL00331  UniProtKB/Swiss-Prot RUVC_SPHAL  crossover junction endodeoxyribonuclease RuvC
[B] Taylorella equigenitalis (strain MCE9)TAYEM00267  UniProtKB/TrEMBL E8UED0  Crossover junction endodeoxyribonuclease RuvC
[B] Polynucleobacter necessarius subsp. necessarius (strain STIR1)POLNS01327  UniProtKB/Swiss-Prot RUVC_POLNS  Crossover junction endodeoxyribonuclease RuvC
[B] Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011)ACIAP00751  UniProtKB/TrEMBL F0Q803  
[B] Acidovorax ebreus (strain TPSY)ACIET02894  UniProtKB/Swiss-Prot RUVC_ACIET  Crossover junction endodeoxyribonuclease ruvC
[B] Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)RHOFD03347  UniProtKB/Swiss-Prot RUVC_RHOFD  crossover junction endodeoxyribonuclease RuvC
[B] Polaromonas naphthalenivorans (strain CJ2)POLNA03339  UniProtKB/Swiss-Prot RUVC_POLNA  Crossover junction endodeoxyribonuclease RuvC
[B] Polaromonas sp. (strain JS666 / ATCC BAA-500)POLSJ01062  UniProtKB/Swiss-Prot RUVC_POLSJ  crossover junction endodeoxyribonuclease RuvC
[B] Verminephrobacter eiseniae (strain EF01-2)VEREI02863  UniProtKB/Swiss-Prot RUVC_VEREI  Crossover junction endodeoxyribonuclease RuvC
[B] Neisseria gonorrhoeae (strain NCCP11945)NEIG200199  UniProtKB/TrEMBL B4RIU4  Holliday junction resolvase
[B] Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298)NITEU00205  UniProtKB/Swiss-Prot RUVC_NITEU  Crossover junction endodeoxyribonuclease ruvC
[B] Nitrosomonas eutropha (strain C91)NITEC00271  UniProtKB/Swiss-Prot RUVC_NITEC  crossover junction endodeoxyribonuclease RuvC TIGRFAM: crossover junction endodeoxyribonuclease RuvC PFAM: Crossover junction endodeoxyribonuclease RuvC KEGG: neu:NE0211 crossover junction endodeoxyribonuclease RuvC
[B] Aromatoleum aromaticum (strain EbN1)AROAE01994  UniProtKB/Swiss-Prot RUVC_AROAE  Crossover junction endodeoxyribonuclease ruvC
[B] Azoarcus sp. (strain BH72)AZOSB00567  UniProtKB/Swiss-Prot RUVC_AZOSB  crossover junction endodeoxyribonuclease Crossover junction endodeoxyribonuclease ruvC (EC 3.1.22.4) (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC). Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5terminal phosphate and a 3terminal hydroxyl group (By similarity). High confidence in function and specificity
[B] Thauera sp. (strain MZ1T)THASP03627  UniProtKB/TrEMBL C4KD34  Crossover junction endodeoxyribonuclease RuvC
[B] Wigglesworthia glossinidia brevipalpisWIGBR00114  UniProtKB/Swiss-Prot RUVC_WIGBR  Crossover junction endodeoxyribonuclease ruvC
[B] Bacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ)BACMS03142  UniProtKB/TrEMBL E1X115  Crossover junction endodeoxyribonuclease ruvC
[B] Desulfovibrio desulfuricans (strain G20)DESDG02276  UniProtKB/Swiss-Prot RUVC_DESDG  crossover junction endodeoxyribonuclease RuvC
[B] Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637)DESVM03174  UniProtKB/TrEMBL B8DNJ6  Crossover junction endodeoxyribonuclease RuvC
[B] Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)GEOBB03268  UniProtKB/Swiss-Prot RUVC_GEOBB  Crossover junction endodeoxyribonuclease RuvC
[B] Geobacter sp. (strain FRC-32)GEOSF02301   ACM20679.1  Crossover junction endodeoxyribonuclease ruvC
[B] Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)GEOSL01054  UniProtKB/Swiss-Prot RUVC_GEOSL  Crossover junction endodeoxyribonuclease ruvC
[B] Geobacter uraniireducens (strain Rf4)GEOUR01357  UniProtKB/Swiss-Prot RUVC_GEOUR  Crossover junction endodeoxyribonuclease RuvC
[B] Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)ANAD200996  UniProtKB/Swiss-Prot RUVC_ANAD2  Crossover junction endodeoxyribonuclease ruvC
[B] Anaeromyxobacter dehalogenans (strain 2CP-C)ANADE00947  UniProtKB/Swiss-Prot RUVC_ANADE  crossover junction endodeoxyribonuclease RuvC
[B] Anaeromyxobacter sp. (strain Fw109-5)ANADF00981  UniProtKB/Swiss-Prot RUVC_ANADF  Crossover junction endodeoxyribonuclease RuvC
[B] Sorangium cellulosum (strain So ce56)SORC505064  UniProtKB/Swiss-Prot RUVC_SORC5  Holliday Junction Resolvase RuvC
[B] Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1)DESTA01373  UniProtKB/TrEMBL I4C3J8  Holliday junction endonuclease RuvC PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC
[B] Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)SYNFM00980  UniProtKB/TrEMBL A0LGY8  crossover junction endodeoxyribonuclease RuvC TIGRFAM: crossover junction endodeoxyribonuclease RuvC PFAM: Crossover junction endodeoxyribonuclease RuvC KEGG: gme:Gmet_0744 crossover junction endodeoxyribonuclease RuvC
[B] Campylobacter jejuni (strain RM1221)CAMJR01832  UniProtKB/Swiss-Prot RUVC_CAMJR  identified by similarity to SP:Q51424; match to protein family HMM PF02075; match to protein family HMM TIGR00228 crossover junction endodeoxyribonuclease RuvC
[B] Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97)CAMJD01710  UniProtKB/Swiss-Prot RUVC_CAMJD  Crossover junction endodeoxyribonuclease ruvC
[B] Campylobacter jejuni subsp. jejuni serotype HS21 (strain M1 / 99/308)CAMJM01617  UniProtKB/TrEMBL E1PNR9  Crossover junction endodeoxyribonuclease ruvC
[B] Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)CAMJ801622  UniProtKB/Swiss-Prot RUVC_CAMJ8  Crossover junction endodeoxyribonuclease RuvC
[B] Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060)CAMLR01504  UniProtKB/Swiss-Prot RUVC_CAMLR  Crossover junction endodeoxyribonuclease RuvC
[B] Helicobacter cinaedi (strain PAGU611)HELCP02087  UniProtKB/TrEMBL I2FEF1  holliday junction resolvase
[B] Helicobacter pylori (strain 52)HELP500437  UniProtKB/TrEMBL D0JZ05  Crossover junction endodeoxyribonuclease ruvC
[B] Helicobacter pylori (strain B38)HELPB00455  UniProtKB/TrEMBL C7BZ12  Crossover junction endodeoxyribonuclease RuvC
[B] Helicobacter pylori (strain Gambia94/24)HELP400857  UniProtKB/TrEMBL E8QHX4  Holliday junction resolvase COG0817 Holliday junction resolvasome, endonuclease subunit
[B] Helicobacter pylori (strain HPAG1)HELPH00860  UniProtKB/Swiss-Prot RUVC_HELPH  Holliday junction endodeoxyribonuclease
[B] Helicobacter pylori (strain Lithuania75)HELPR00823  UniProtKB/TrEMBL E8QQ08  Holliday junction resolvase COG0817 Holliday junction resolvasome, endonuclease subunit
[B] Helicobacter pylori (strain SJM180)HELPM00863  UniProtKB/TrEMBL E1PZY6  Holliday junction resolvase COG0817 Holliday junction resolvasome, endonuclease subunit
[B] Helicobacter pylori (strain Shi470)HELPS00465  UniProtKB/Swiss-Prot RUVC_HELPS  Holliday junction resolvase
[B] Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)WOLSU02027  UniProtKB/Swiss-Prot RUVC_WOLSU  Crossover junction endodeoxyribonuclease ruvC

Internal infos: group_nr=306058; pid=2388, generation_time=0.031