List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 239580

Choline dehydrogenase
This group has 6 members: 1 [E]ukaryota 5 [B]acteria
Fingerprint: FRGDEIQ

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Capitella sp. ICAPI125587   143415  jgi|Capca1|143415|e_gw1.24439.1.1
[B] Rhizobium etli (strain CIAT 652)RHIE601200  UniProtKB/Swiss-Prot BETA_RHIE6  Choline dehydrogenase (CHD) protein
[B] Rhizobium leguminosarum bv. viciae (strain 3841)RHIL301276  UniProtKB/Swiss-Prot BETA_RHIL3  putative choline dehydrogenase similarity:fasta; with=UniProt:BETA_RHIME (EMBL:SME591785); Rhizobium meliloti (Sinorhizobium meliloti).; betA; Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH).; length=549; id 88.160; 549 aa overlap; query 1-549; subject 1-549 similarity:fasta; with=UniProt:BETA_AGRT5 (EMBL:C97460); Agrobacterium tumefaciens (strain C58/ATCC 33970).; betA; Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH).; length=549; id 88.160; 549 aa overlap; query 1-549; subject 1-549
[B] Alteromonas macleodii (strain DSM 17117 / Deep ecotype)ALTMD02594  UniProtKB/TrEMBL B4RTD2  Choline dehydrogenase
[B] Vibrio parahaemolyticusVIBPA04180  UniProtKB/TrEMBL Q87H53  Choline dehydrogenase
[B] Vibrio splendidus (strain LGP32)VIBSL02992  UniProtKB/TrEMBL B7VQ29  Choline dehydrogenase