| [E] Populus trichocarpa | POPTR28722 | grail3.8458000201 | jgi|Poptr1_1|680957|grail3.8458000201 [DNA did not match protein] [DNA partly invalid] |
| [A] Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) | METLZ00189 | A2SPW1 | Hypothetical protein |
| [B] Acidobacteria bacterium (strain Ellin345) | ACIBL04276 | Q1IIL3 | Peptide deformylase |
| [B] Roseiflexus sp. (strain RS-1) | ROSS101009 | DEF_ROSS1 | Peptide deformylase |
| [B] Clostridium perfringens | CLOPE01744 | DEF1_CLOPE | Peptide deformylase 1 |
| [B] Clostridium perfringens (strain ATCC 13124 / NCTC 8237) | CLOP101953 | Q0TPL0 | polypeptide deformylase identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 |
| [B] Clostridium perfringens (strain SM101) | CLOPS01668 | Q0SS77 | polypeptide deformylase identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 |
| [B] Caulobacter sp. (strain K31) | CAUSK04487 | DEF_CAUSK | Peptide deformylase |
| [B] Phenylobacterium zucineum (strain HLK1) | PHEZH00373 | DEF_PHEZH | Polypeptide deformylase |
| [B] Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) | BEII900488 | B2IEV8 | Peptide deformylase |
| [B] Bradyrhizobium japonicum | BRAJA08047 | DEF_BRAJA | Peptide deformylase |
| [B] Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) | BRASB06854 | DEF_BRASB | Peptide deformylase |
| [B] Bradyrhizobium sp. (strain ORS278) | BRASO00717 | DEF_BRASO | Peptide deformylase |
| [B] Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) | NITWN02881 | Q3SN29 | formylmethionine deformylase |
| [B] Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) | OLICO03489 | DEF_OLICO | Peptide deformylase |
| [B] Rhodopseudomonas palustris | RHOPA00621 | DEF_RHOPA | observed by proteomics Citation: Proteomics from VerBerkmoes et al. (2003) unpublished putative N-formylmethionylaminoacyl-tRNA deformylase |
| [B] Rhodopseudomonas palustris (strain BisB18) | RHOPB00793 | DEF_RHOPB | Peptide deformylase |
| [B] Rhodopseudomonas palustris (strain TIE-1) | RHOPT00622 | DEF_RHOPT | Peptide deformylase |
| [B] Mesorhizobium sp. (strain BNC1) | MESSB00393 | DEF_MESSB | peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase KEGG: mlo:mll4855 polypeptide deformylase |
| [B] Hyphomonas neptunium (strain ATCC 15444) | HYPNA00507 | DEF_HYPNA | Peptide deformylase |
| [B] Jannaschia sp. (strain CCS1) | JANSC00465 | Q28V79 | Peptide deformylase |
| [B] Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) | RHOS402484 | Q3IZH9 | Proteomics show homology to Sinorhizobium meliloti peptide deformylase. Citation: Proc. Natl. Acad. Sci. U.S.A. 98 (17), 9877-9882 (2001) Formylmethionine deformylase |
| [B] Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) | RHOS500146 | A4WNU5 | Peptide deformylase |
| [B] Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) | RHOS102495 | A3PMR8 | peptide deformylase KEGG: rsp:RSP_0872 formylmethionine deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase |
| [B] Rhodobacter sphaeroides (strain KD131 / KCTC 12085) | RHOSK02223 | B9KML4 | Peptide deformylase |
| [B] Acidiphilium cryptum (strain JF-5) | ACICJ00402 | A5FVK2 | Peptide deformylase precursor |
| [B] Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) | GLUDA02069 | A9HKQ2 | Peptide deformylase |
| [B] Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) | RHORT03336 | Q2RP01 | Peptide deformylase |
| [B] Anaplasma phagocytophilum (strain HZ) | ANAPZ01202 | Q2GID0 | peptide deformylase identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079 |
| [B] Ehrlichia ruminantium (strain Gardel) | EHRRG00044 | Q5FF48 | Similar to sp|Q92IZ1|DEF1_RICCN sp|Q9ZDV8|DEF_RICPR; Ortholog to ERWE_CDS_00450 Peptide deformylase |
| [B] Ehrlichia ruminantium (strain Welgevonden) | EHRRW00045 | Q5HCC3 | Similar to sp|Q92IZ1|DEF1_RICCN sp|Q9ZDV8|DEF_RICPR; Ortholog to ERGA_CDS_00440 Peptide deformylase |
| [B] Rickettsia canadensis (strain McKiel) | RICCK00232 | DEF_RICCK | Peptide deformylase |
| [B] Wolbachia pipientis subsp. Culex pipiens (strain wPip) | WOLPP00804 | DEF_WOLPP | Polypeptide deformylase |
| [B] Pelagibacter ubique | PELUB00453 | DEF_PELUB | peptide deformylase |
| [B] Bordetella bronchiseptica | BORBR00242 | DEF1_BORBR | ortholog of Bordetella pertussis (BX470248) BP0552 polypeptide deformylase |
| [B] Bordetella parapertussis | BORPA00241 | DEF1_BORPA | ortholog of Bordetella pertussis (BX470248) BP0552 polypeptide deformylase |
| [B] Bordetella pertussis | BORPE00503 | DEF2_BORPE | Similar to Escherichia coli polypeptide deformylase Def or Fms or B3287 SW:DEF_ECOLI (P27251) (168 aa) fasta scores: E(): 8.2e-32, 53.846% id in 169 aa, and to Neisseria meningitidis polypeptide deformylase Def or Nma0164 or Nmb0110 TR:Q9JQN0 (EMBL:AL162752) (167 aa) fasta scores: E(): 6.1e-38, 64.848% id in 165 aa. Also similar to BP0039, 40.881% identity (44.218% ungapped) in 159 aa overlap. polypeptide deformylase |
| [B] Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) | BORPD04645 | A9IFQ3 | Polypeptide deformylase |
| [B] Burkholderia ambifaria (strain MC40-6) | BURA403032 | B1YPX7 | Peptide deformylase |
| [B] Burkholderia cenocepacia (strain AU 1054) | BURCA02487 | Q1BSJ3 | Peptide deformylase |
| [B] Burkholderia cenocepacia (strain HI2424) | BURCH03109 | A0KBJ8 | peptide deformylase KEGG: bcn:Bcen_2513 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase |
| [B] Burkholderia cenocepacia (strain MC0-3) | BURCC03114 | B1K0J6 | Peptide deformylase |
| [B] Burkholderia cepacia (strain ATCC 53795 / AMMD) | BURCM03168 | Q0BAT5 | peptide deformylase KEGG: bur:Bcep18194_A6478 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase |
| [B] Burkholderia cepacia (strain J2315 / LMG 16656) | BURCJ00458 | B4E7V7 | peptide deformylase |
| [B] Burkholderia multivorans (strain ATCC 17616 / 249) | BURM100442 | A9AC70 | Peptide deformylase |
| [B] Burkholderia sp. (strain 383) | BURS303283 | Q39BU4 | Peptide deformylase |
| [B] Burkholderia vietnamiensis (strain G4 / LMG 22486) | BURVG03180 | A4JJ23 | Peptide deformylase |
| [B] Burkholderia mallei | BURMA00112 | A5TRD3 | Polypeptide deformylase |
| [B] Burkholderia mallei (strain NCTC 10229) | BURM902137 | A2S8G8 | Polypeptide deformylase |
| [B] Burkholderia mallei (strain NCTC 10247) | BURM702181 | A3MNP3 | Polypeptide deformylase |
| [B] Burkholderia mallei (strain SAVP1) | BURMS02635 | A1V798 | Polypeptide deformylase |
| [B] Burkholderia phymatum (strain DSM 17167 / STM815) | BURP800033 | B2JJU3 | Peptide deformylase |
| [B] Burkholderia phytofirmans (strain DSM 17436 / PsJN) | BURPP00267 | B2T1K5 | Peptide deformylase |
| [B] Burkholderia pseudomallei | BURPS00123 | A8KKE2 | Similar to Escherichia coli peptide deformylase Def or Fms SWALL:DEF_ECOLI (SWALL:P27251) (168 aa) fasta scores: E(): 1.1e-34, 58.53% id in 164 aa, and to Ralstonia solanacearum probable polypeptide deformylase protein rsc0070 or rs02248 SWALL:Q8Y3B0 (EMBL:AL646057) (169 aa) fasta scores: E(): 5.8e-50, 80.35% id in 168 aa peptide deformylase |
| [B] Burkholderia pseudomallei (strain 1106a) | BURP000153 | A3NQ22 | Polypeptide deformylase |
| [B] Burkholderia pseudomallei (strain 1710b) | BURP100334 | Q3JXE2 | peptide deformylase identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 |
| [B] Burkholderia pseudomallei (strain 668) | BURP600149 | A3N4D3 | Polypeptide deformylase |
| [B] Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) | BURTA00125 | Q2T2B2 | peptide deformylase identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 |
| [B] Burkholderia xenovorans (strain LB400) | BURXL00043 | Q147A5 | Peptide deformylase |
| [B] Cupriavidus taiwanensis (strain R1 / LMG 19424) | CUPTR03078 | B3R823 | Peptide deformylase |
| [B] Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) | RALEH03598 | Q0K5G5 | formylmethionine deformylase |
| [B] Ralstonia eutropha (strain JMP134) | RALEJ03374 | Q46VR8 | Formylmethionine deformylase |
| [B] Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) | RALME03486 | Q1LHD9 | formylmethionine deformylase |
| [B] Polynucleobacter necessarius (strain STIR1) | POLNS01499 | DEF_POLNS | Peptide deformylase |
| [B] Polynucleobacter sp. (strain QLW-P1DMWA-1) | POLSQ02065 | A4T0M6 | Peptide deformylase |
| [B] Ralstonia pickettii (strain 12J) | RALPJ03564 | B2U797 | Peptide deformylase |
| [B] Polaromonas naphthalenivorans (strain CJ2) | POLNA03802 | A1VU46 | Peptide deformylase |
| [B] Polaromonas sp. (strain JS666 / ATCC BAA-500) | POLSJ04542 | Q122M0 | Peptide deformylase |
| [B] Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) | RHOFD03779 | Q21RP4 | Peptide deformylase |
| [B] Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) | LEPCP00349 | B1XW98 | Peptide deformylase |
| [B] Methylibium petroleiphilum (strain PM1) | METPP00283 | A2SCF6 | Peptide deformylase |
| [B] Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis) | JANMA00143 | A6SU86 | Polypeptide deformylase |
| [B] Methylobacillus flagellatus (strain KT / ATTC 51484 / DSM 6875) | METFK00187 | Q1H4X9 | Peptide deformylase |
| [B] Chromobacterium violaceum | CHRVO04256 | DEF_CHRVO | identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0242 Polypeptide deformylase |
| [B] Laribacter hongkongensis (strain HLHK9) | LARHH03097 | C1D690 | Def |
| [B] Nitrosomonas europaea | NITEU01911 | DEF2_NITEU | Formylmethionine deformylase |
| [B] Nitrosomonas eutropha (strain C71) | NITEC00371 | Q0AJ01 | peptide deformylase KEGG: neu:NE1970 formylmethionine deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase |
| [B] Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) | NITMU00381 | Q2YC19 | Peptide deformylase |
| [B] Azoarcus sp. (strain BH72) | AZOSB00099 | A1K1L2 | probable peptide deformylase Probable peptide deformylase (EC 3.5.1.88). Homology to def of E. coli of 54% (sprot|DEF_ECOLI(SRS)). Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions Interpro: Formylmethionine deformylase (IPR000181) Pfam: Polypeptide deformylase Tigrfam: pept_deformyl: polypeptide deformylase no signal peptide no TMHs High confidence in function and specificity |
| [B] Dechloromonas aromatica (strain RCB) | DECAR00021 | Q47K51 | Formylmethionine deformylase |
| [B] Anaeromyxobacter dehalogenans (strain 2CP-C) | ANADE00721 | Q2INW9 | peptide deformylase |
| [B] Anaeromyxobacter sp. (strain Fw109-5) | ANADF00760 | A7H8D4 | Peptide deformylase |
| [B] Myxococcus xanthus (strain DK 1622) | MYXXD01378 | Q1DCD6 | peptide deformylase identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079 |
| [B] Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) | CAMHC00018 | A7HZE9 | Peptide deformylase |
| [B] Alteromonas macleodii (strain DSM 17117 / Deep ecotype) | ALTMD00022 | DEF_ALTMD | N-terminal methionine peptide deformylase |
| [B] Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) | MARAV00040 | A1TWN1 | peptide deformylase KEGG: sde:Sde_0021 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase |
| [B] Colwellia psychrerythraea (strain 34H / ATCC BAA-681) | COLP300020 | Q48AS8 | identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079 polypeptide deformylase |
| [B] Pseudoalteromonas haloplanktis (strain TAC 125) | PSEHT00023 | DEF_PSEHT | Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9374870; Product type e : enzyme N-terminal methionine peptide deformylase |
| [B] Psychromonas ingrahamii (strain 37) | PSYIN00075 | A1SR37 | peptide deformylase KEGG: vvy:VV3225 N-formylmethionyl-tRNA deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase |
| [B] Shewanella baltica (strain OS155 / ATCC BAA-1091) | SHEB500031 | A3CYK5 | Peptide deformylase |
| [B] Shewanella baltica (strain OS185) | SHEB800027 | A6WHB1 | Peptide deformylase |
| [B] Shewanella baltica (strain OS195) | SHEB900031 | A9KUA2 | KEGG: son:SO_0032 polypeptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase peptide deformylase |
| [B] Shewanella baltica (strain OS223) | SHEB200031 | B8E3S4 | Peptide deformylase |
| [B] Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) | SHEDO00024 | Q12TA5 | Peptide deformylase |
| [B] Shewanella oneidensis | SHEON00032 | DEF1_SHEON | Peptide deformylase 1 |
| [B] Shewanella pealeana (strain ANG-SQ1 / ATCC 700345) | SHEPA00027 | A8GYH3 | KEGG: slo:Shew_3736 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase peptide deformylase |
| [B] Shewanella piezotolerans (strain WP3 / JCM 13877) | SHEPW00055 | B8CHB2 | Peptide deformylase |
| [B] Shewanella sediminis (strain HAW-EB3) | SHESH00035 | A8FP75 | KEGG: slo:Shew_3736 peptide deformylase Peptide deformylase |
| [B] Shewanella sp. (strain ANA-3) | SHESA00035 | A0KR61 | peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase KEGG: son:SO0032 polypeptide deformylase |
| [B] Shewanella sp. (strain MR-4) | SHESM00029 | Q0HPA6 | Peptide deformylase |
| [B] Shewanella sp. (strain MR-7) | SHESR00027 | Q0I0S2 | Peptide deformylase |
| [B] Baumannia cicadellinicola (subsp. Homalodisca coagulata) | BAUCH00379 | DEF_BAUCH | peptide deformylase identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079 |
| [B] Thioalkalivibrio sp. (strain HL-EbGR7) | THISH00187 | DEF_THISH | Peptide deformylase |
| [B] Buchnera aphidicola (subsp. Acyrthosiphon pisum) | BUCAI00461 | DEF_BUCAI | polypeptide deformylase |
| [B] Buchnera aphidicola (subsp. Baizongia pistaciae) | BUCBP00401 | DEF_BUCBP | COG0242; PDF; formylmethionine deformylase polypeptide deformylase |
| [B] Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) | BUCA500454 | DEF_BUCA5 | Peptide deformylase |
| [B] Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) | BUCAT00452 | DEF_BUCAT | Peptide deformylase |
| [B] Escherichia coli O139:H28 (strain E24377A / ETEC) | ECO2404779 | A7ZGN7 | Peptide deformylase |
| [B] Klebsiella pneumoniae (strain 342) | KLEP300426 | DEF_KLEP3 | Peptide deformylase |
| [B] Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) | KLEP703634 | DEF_KLEP7 | Peptide deformylase |
| [B] Erwinia carotovora (subsp. atroseptica) | ERWCT03963 | DEF_ERWCT | Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 peptide deformylase Def or Fms or b3287 or c4047 or z4657 or ecs4152 SWALL:DEF_ECOLI (SWALL:P27251) (168 aa) fasta scores: E(): 1.2e-50, 83.83% id in 167 aa peptide deformylase |
| [B] Photorhabdus luminescens (subsp. laumondii) | PHOLL04541 | DEF_PHOLL | polypeptide deformylase (PDF) (formylmethionine deformylase) |
| [B] Serratia proteamaculans (strain 568) | SERP504482 | DEF_SERP5 | Peptide deformylase |
| [B] Wigglesworthia glossinidia brevipalpis | WIGBR00496 | DEF_WIGBR | Protein fate |
| [B] Candidatus Blochmannia floridanus | BLOFL00206 | DEF_BLOFL | COG caterory=J polypeptide deformylase |
| [B] Methylococcus capsulatus | METCA02667 | Q603G3 | identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079 polypeptide deformylase |
| [B] Hahella chejuensis (strain KCTC 2396) | HAHCH00030 | DEF_HAHCH | peptide deformylase TIGRFAMsMatches:TIGR00079 |
| [B] Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) | CHRSD02848 | DEF_CHRSD | Peptide deformylase |
| [B] Marinomonas sp. (strain MWYL1) | MARMS00017 | A6VR81 | Peptide deformylase |
| [B] Actinobacillus pleuropneumoniae serotype 3 (strain JL03) | ACTPJ01680 | B0BSD8 | Peptide deformylase |
| [B] Actinobacillus pleuropneumoniae serotype 5b (strain L20) | ACTP201677 | A3N309 | Peptide deformylase |
| [B] Actinobacillus pleuropneumoniae serotype 7 (strain AP76) | ACTP701740 | DEF_ACTP7 | Peptide deformylase |
| [B] Haemophilus ducreyi | HAEDU01570 | DEF_HAEDU | formylmethionine deformylase peptide deformylase |
| [B] Haemophilus influenzae | HAEIN00608 | DEF_HAEIN | Peptide deformylase |
| [B] Haemophilus influenzae (strain 86-028NP) | HAEI800636 | DEF_HAEI8 | PDF; polypeptide deformylase; Similar to: HI0622, DEF_HAEIN peptide deformylase |
| [B] Haemophilus influenzae (strain PittEE) | HAEIE01607 | DEF_HAEIE | Peptide deformylase |
| [B] Haemophilus influenzae (strain PittGG) | HAEIG01017 | DEF_HAEIG | Putative uncharacterized protein |
| [B] Haemophilus parasuis serovar 5 (strain SH0165) | HAEPS01404 | DEF_HAEPS | Peptide deformylase |
| [B] Acinetobacter baumannii (strain AB0057) | ACIB500199 | B7I1X5 | Peptide deformylase |
| [B] Acinetobacter baumannii (strain AB307-0294) | ACIB303279 | B7H283 | Peptide deformylase |
| [B] Acinetobacter baumannii (strain ACICU) | ACIBC00190 | B2I114 | N-formylmethionyl-tRNA deformylase |
| [B] Acinetobacter baumannii (strain AYE) | ACIBY03408 | B0VCB4 | Peptide deformylase 1 |
| [B] Acinetobacter baumannii (strain SDF) | ACIBS00151 | DEF_ACIBS | Peptide deformylase 1 |
| [B] Acinetobacter sp. (strain ADP1) | ACIAD00196 | Q6FFH6 | Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) |
| [B] Psychrobacter arcticus (strain DSM 17307 / 273-4) | PSYA200028 | DEF_PSYA2 | Peptide deformylase |
| [B] Psychrobacter sp. (strain PRwf-1) | PSYWF00042 | DEF_PSYWF | Peptide deformylase |
| [B] Cellvibrio japonicus (strain Ueda107) | CELJU03474 | DEF_CELJU | Peptide deformylase |
| [B] Pseudomonas aeruginosa | PSEAE00019 | DEF_PSEAE | Peptide deformylase |
| [B] Pseudomonas aeruginosa (strain LESB58) | PSEA800019 | B7V0Q4 | Peptide deformylase |
| [B] Pseudomonas aeruginosa (strain PA7) | PSEA700020 | A6UX81 | Peptide deformylase |
| [B] Pseudomonas aeruginosa (strain UCBPP-PA14) | PSEAB00019 | Q02V62 | polypeptide deformylase |
| [B] Pseudomonas entomophila (strain L48) | PSEE400022 | Q1I2G5 | peptide deformylase 1 Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme |
| [B] Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) | PSEF500022 | Q4KKQ9 | identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 polypeptide deformylase |
| [B] Pseudomonas fluorescens (strain PfO-1) | PSEPF00017 | Q3KKE5 | Formylmethionine deformylase |
| [B] Pseudomonas mendocina (strain ymp) | PSEMY00053 | DEF_PSEMY | Peptide deformylase |
| [B] Pseudomonas putida (strain F1 / ATCC 700007) | PSEP100082 | A5VWJ9 | Peptide deformylase |
| [B] Pseudomonas putida (strain GB-1) | PSEPG00084 | B0KF30 | peptide deformylase unknown EC_number=3.5.1.88 KEGG: pen:PSEEN0025 peptide deformylase 1 TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase |
| [B] Pseudomonas putida (strain KT2440) | PSEPK00068 | DEF1_PSEPK | identified by match to TIGR protein family HMM TIGR00079 polypeptide deformylase |
| [B] Pseudomonas putida (strain W619) | PSEPW00087 | B1J433 | Peptide deformylase |
| [B] Pseudomonas stutzeri (strain A1501) | PSEU500021 | DEF_PSEU5 | Polypeptide deformylase |
| [B] Pseudomonas syringae (pv. tomato) | PSESM00167 | DEF1_PSESM | similar to SP:P27251; identified by sequence similarity; putative polypeptide deformylase |
| [B] Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) | PSE1400017 | Q48QI1 | identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 peptide deformylase |
| [B] Pseudomonas syringae pv. syringae (strain B728a) | PSEU200019 | Q500S9 | Formylmethionine deformylase |
| [B] Thiomicrospira crunogena (strain XCL-2) | THICR00192 | DEF_THICR | Peptide deformylase |
| [B] Vibrio fischeri (strain MJ11) | VIBFM02553 | DEF_VIBFM | Peptide deformylase |
| [B] Vibrio cholerae | VIBCH00046 | DEF1_VIBCH | similar to SP:P27251 GB:X77800 PID:41474 PID:443989 PID:471304; identified by sequence similarity; putative polypeptide deformylase |
| [B] Vibrio cholerae (strain ATCC 39541 / O395) | VIBC302311 | A5F4B3 | Polypeptide deformylase |
| [B] Vibrio cholerae serotype O1 (strain M66-2) | VIBCM00046 | C3LPB9 | |
| [B] Vibrio fischeri (strain ATCC 700601 / ES114) | VIBF102531 | DEF_VIBF1 | peptide deformylase |
| [B] Vibrio harveyi (strain ATCC BAA-1116 / BB120) | VIBHB00306 | DEF_VIBHB | Putative uncharacterized protein |
| [B] Vibrio parahaemolyticus | VIBPA03036 | DEF1_VIBPA | similar to GB:AAF93224.1 (AE004095) percent identity 88 in 169 aa polypeptide deformylase |
| [B] Vibrio splendidus (strain LGP32) | VIBSL02900 | B7VMX1 | Peptide deformylase |
| [B] Vibrio vulnificus | VIBVU00967 | DEF1_VIBVU | COG0242 N-formylmethionyl-tRNA deformylase |
| [B] Vibrio vulnificus (strain YJ016) | VIBVY03192 | DEF2_VIBVY | Peptide deformylase 2 |
| [B] Stenotrophomonas maltophilia (strain K279a) | STRMK03922 | DEF_STRMK | Putative peptide deformylase |
| [B] Stenotrophomonas maltophilia (strain R551-3) | STRM503566 | DEF_STRM5 | Peptide deformylase |
| [B] Xanthomonas axonopodis (pv. citri) | XANAC03699 | DEF2_XANAC | identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark polypeptide deformylase |
| [B] Xanthomonas campestris pv. campestris | XANCP03644 | DEF2_XANCP | Peptide deformylase 2 |
| [B] Xanthomonas campestris pv. campestris (strain 8004) | XANC803711 | Q4UQ14 | polypeptide deformylase |
| [B] Xanthomonas campestris pv. campestris (strain B100) | XANCB03914 | B0RWQ8 | Peptide deformylase |
| [B] Xanthomonas campestris pv. vesicatoria (strain 85-10) | XANC503837 | Q3BNK6 | peptide deformylase |
| [B] Xylella fastidiosa | XYLFA00920 | DEF_XYLFA | similar to SP|P27251 (percent identity: 55 %/query alignment coverage: 98.2 %/subject alignment coverage: 98.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder polypeptide deformylase |
| [B] Xylella fastidiosa (strain M12) | XYLFM01700 | DEF_XYLFM | Peptide deformylase |
| [B] Xylella fastidiosa (strain M23) | XYLF201764 | DEF_XYLF2 | Peptide deformylase |
| [B] Xylella fastidiosa (strain Temecula1 / ATCC 700964) | XYLFT01657 | DEF_XYLFT | Peptide deformylase |
| [B] Ruthia magnifica subsp. Calyptogena magnifica | RUTMC00871 | A1AXL8 | Peptide deformylase |
| [B] Magnetococcus sp. (strain MC-1) | MAGSM00136 | A0L3X6 | peptide deformylase KEGG: rru:Rru_A3350 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase |