List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.

Keyword Protein Sequence Group Entry

OMA Group 3900

patched 1
This group has 68 members: 68 [E]ukaryota
Fingerprint: PDRDYLH

Protein List | Alignment | Close Groups | Ontology Download: download fasta, download darwin

[E] Homo sapiensHUMAN27980  UniProtKB/Swiss-Prot PTC1_HUMAN  patched 1 [Source:HGNC Symbol;Acc:9585]pmp logo
[E] Gorilla gorilla gorillaGORGO20432  UniProtKB/TrEMBL G3QYL0  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Pongo abeliiPONAB15971  UniProtKB/TrEMBL H2PSS7  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Nomascus leucogenysNOMLE19056  UniProtKB/TrEMBL G1S4D5  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Macaca mulattaMACMU09097  UniProtKB/TrEMBL F7H772  Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6W9T3]
[E] Callithrix jacchusCALJA00321  UniProtKB/TrEMBL F7FSF2  Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F7FSF2]
[E] Tarsius syrichtaTARSY10301  Ensembl ENSTSYP00000003102  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Microcebus murinusMICMU09626  Ensembl ENSMICP00000000654  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Otolemur garnettiiOTOGA17801  UniProtKB/TrEMBL H0WM44  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Oryctolagus cuniculusRABIT08318  Ensembl ENSOCUP00000002587  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Cavia porcellusCAVPO07293  UniProtKB/TrEMBL H0UYF0  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Dipodomys ordiiDIPOR09775  Ensembl ENSDORP00000001233  patched homolog 1 [Source:MGI Symbol;Acc:MGI:105373]
[E] Mus musculusMOUSE05951  UniProtKB/Swiss-Prot PTC1_MOUSE  patched homolog 1 [Source:MGI Symbol;Acc:MGI:105373]pmp logo
[E] Rattus norvegicusRATNO08910  UniProtKB/TrEMBL Q6UY90  protein patched homolog 1 [Source:RefSeq peptide;Acc:NP_446018]
[E] Loxodonta africanaLOXAF16890  UniProtKB/TrEMBL G3SZ85  Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3SZ85]
[E] Echinops telfairiECHTE13096  Ensembl ENSETEP00000012713  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Canis familiarisCANFA00373  UniProtKB/TrEMBL F1PNE0  Patched-like protein 1 [Source:UniProtKB/TrEMBL;Acc:C9DRQ1]
[E] Mustela putorius furoMUSPF02727  UniProtKB/TrEMBL M3Y5Q9  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Ailuropoda melanoleucaAILME11680  UniProtKB/TrEMBL G1LYU6  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Felis catusFELCA13999  UniProtKB/TrEMBL M3WEN6  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Tursiops truncatusTURTR03406  Ensembl ENSTTRP00000010338  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Sus scrofaPIGXX05915  UniProtKB/TrEMBL I3LVF2  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Pteropus vampyrusPTEVA07255  Ensembl ENSPVAP00000002449  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Myotis lucifugusMYOLU13035  UniProtKB/TrEMBL G1PU63  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Erinaceus europaeusERIEU09263  Ensembl ENSEEUP00000005157  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Equus caballusHORSE10926  UniProtKB/TrEMBL F7CXS3  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Dasypus novemcinctusDASNO04955  Ensembl ENSDNOP00000010183  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Choloepus hoffmanniCHOHO09141  Ensembl ENSCHOP00000003562  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Sarcophilus harrisiiSARHA05033  UniProtKB/TrEMBL G3WNV7  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Monodelphis domesticaMONDO15382  UniProtKB/TrEMBL F6YGY2  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Macropus eugeniiMACEU08835  Ensembl ENSMEUP00000001150  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Anas platyrhynchosANAPL06224  UniProtKB/TrEMBL U3IZB2  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Gallus gallusCHICK15723  Ensembl ENSGALP00000020572  protein patched homolog 1 [Source:RefSeq peptide;Acc:NP_990291]
[E] Ficedula albicollisFICAL11149  UniProtKB/TrEMBL U3JLH5  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Taeniopygia guttataTAEGU15613  UniProtKB/TrEMBL H0YQK3  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Pelodiscus sinensisPELSI10966  UniProtKB/TrEMBL K7FN64  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Xenopus tropicalisXENTR05735  UniProtKB/TrEMBL F7DZP4  patched 1 [Source:Jamboree;Acc:XB-GENE-488222]
[E] Latimeria chalumnaeLATCH07755  UniProtKB/TrEMBL H3A349  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Oreochromis niloticusORENI18974  UniProtKB/TrEMBL I3KD47  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Oryzias latipesORYLA17454  UniProtKB/TrEMBL H2LHJ1  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Xiphophorus maculatusXIPMA19967  UniProtKB/TrEMBL M4AMW1  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Gasterosteus aculeatusGASAC14213  UniProtKB/TrEMBL G3NVD8  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Takifugu rubripesTAKRU20431  UniProtKB/TrEMBL H2UJJ9  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Gadus morhuaGADMO20225  Ensembl ENSGMOP00000008304  patched 1 [Source:HGNC Symbol;Acc:9585]
[E] Danio rerioDANRE25253  UniProtKB/TrEMBL F1QRE4  patched 1 [Source:ZFIN;Acc:ZDB-GENE-980526-196]
[E] Branchiostoma floridaeBRAFL24530  UniProtKB/TrEMBL C3YM07  jgi|Brafl1|225229|e_gw.106.163.1
[E] Ciona savignyiCIOSA04427  UniProtKB/TrEMBL H2Z0N5  
[E] Pristionchus pacificusPRIPA23182  UniProtKB/TrEMBL H3FMC2  locus:Ppa-ptc-1; status:Predicted
[E] Caenorhabditis brenneriCAEBE17676  WBGene00157208  locus:Cbn-ptc-1
[E] Caenorhabditis briggsaeCAEBR03124   CBG03294  
[E] Caenorhabditis remaneiCAERE02306  UniProtKB/TrEMBL E3LG91  locus:Cre-ptc-1
[E] Trichinella spiralisTRISP09492  UniProtKB/TrEMBL E5ST13  
[E] Ixodes scapularisIXOSC02328  UniProtKB/TrEMBL B7P4P1  patched-2 protein, putative
[E] Daphnia pulexDAPPU00020  UniProtKB/TrEMBL E9FS56  jgi|Dappu1|40041|e_gw1.1.360.1
[E] Tribolium castaneumTRICA00587  UniProtKB/TrEMBL D6W7W0  Patched [Source:UniProt/SPTREMBL;Acc:D6W7W0]
[E] Drosophila virilisDROVI02266  UniProtKB/TrEMBL B4LNB3  GJ21830 [Source:FlyBase;GeneId:FBgn0208948]
[E] Drosophila grimshawiDROGR09733  UniProtKB/TrEMBL B4J776  GH20087 [Source:FlyBase;GeneId:FBgn0127551]
[E] Drosophila melanogasterDROME03072  UniProtKB/Swiss-Prot PTC_DROME  patched [Source:FlyBase gene name;Acc:FBgn0003892]pmp logo
[E] Drosophila pseudoobscura pseudoobscuraDROPS06666  UniProtKB/TrEMBL Q28Y68  
[E] Drosophila willistoniDROWI03057  UniProtKB/TrEMBL B4MPM7  GK21732 [Source:FlyBaseName_gene;Acc:FBgn0223717]
[E] Anopheles gambiaeANOGA07466  UniProtKB/TrEMBL Q7Q2Y4   -
[E] Aedes aegyptiAEDAE11564  UniProtKB/TrEMBL Q17GY7   -
[E] Culex quinquefasciatusCULQU14779  UniProtKB/TrEMBL B0W7D0  Patched [Source:UniProtKB/TrEMBL;Acc:B0W7D0]
[E] Apis melliferaAPIME07770  UniProtKB/TrEMBL H9KH14  
[E] Acyrthosiphon pisumACYPI10510  UniProtKB/TrEMBL J9JJM2  similar to putative hedgehog receptor [Source:RefSeq peptide predicted;Acc:XP_001949597]
[E] Pediculus humanus subsp. corporisPEDHC10013  UniProtKB/TrEMBL E0VR03  
[E] Capitella sp. 1CAPI102242   226628  jgi|Capca1|226628|estExt_fgenesh1_pg.C_5470014
[E] Nematostella vectensisNEMVE05212  UniProtKB/TrEMBL A7RK33  jgi|Nemve1|84424|e_gw.9.8.1

Internal infos: group_nr=3900; pid=8252, generation_time=0.031