| [A] Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) | METLZ00189 | A2SPW1 | Hypothetical protein |
| [B] Nocardioides sp. (strain BAA-499 / JS614) | NOCSJ02539 | A1SJX1 | Peptide deformylase |
| [B] Roseiflexus sp. (strain RS-1) | ROSS101009 | DEF_ROSS1 | Peptide deformylase |
| [B] Syntrophomonas wolfei subsp. wolfei (strain Goettingen) | SYNWW01164 | DEF_SYNWW | Peptide deformylase |
| [B] Caulobacter sp. (strain K31) | CAUSK04487 | DEF_CAUSK | Peptide deformylase |
| [B] Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) | BEII900488 | B2IEV8 | Peptide deformylase |
| [B] Bradyrhizobium japonicum | BRAJA08047 | DEF_BRAJA | Peptide deformylase |
| [B] Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) | BRASB06854 | DEF_BRASB | Peptide deformylase |
| [B] Bradyrhizobium sp. (strain ORS278) | BRASO00717 | DEF_BRASO | Peptide deformylase |
| [B] Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) | NITWN02881 | Q3SN29 | formylmethionine deformylase |
| [B] Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) | OLICO03489 | DEF_OLICO | Peptide deformylase |
| [B] Hyphomonas neptunium (strain ATCC 15444) | HYPNA00507 | DEF_HYPNA | Peptide deformylase |
| [B] Acidiphilium cryptum (strain JF-5) | ACICJ00402 | A5FVK2 | Peptide deformylase precursor |
| [B] Ehrlichia ruminantium (strain Gardel) | EHRRG00044 | Q5FF48 | Similar to sp|Q92IZ1|DEF1_RICCN sp|Q9ZDV8|DEF_RICPR; Ortholog to ERWE_CDS_00450 Peptide deformylase |
| [B] Ehrlichia ruminantium (strain Welgevonden) | EHRRW00045 | Q5HCC3 | Similar to sp|Q92IZ1|DEF1_RICCN sp|Q9ZDV8|DEF_RICPR; Ortholog to ERGA_CDS_00440 Peptide deformylase |
| [B] Rickettsia canadensis (strain McKiel) | RICCK00232 | DEF_RICCK | Peptide deformylase |
| [B] Wolbachia pipientis subsp. Culex pipiens (strain wPip) | WOLPP00804 | DEF_WOLPP | Polypeptide deformylase |
| [B] Pelagibacter ubique | PELUB00453 | DEF_PELUB | peptide deformylase |
| [B] Erythrobacter litoralis (strain HTCC2594) | ERYLH00412 | DEF_ERYLH | polypeptide deformylase COG0242 N-formylmethionyl-tRNA deformylase |
| [B] Bordetella bronchiseptica | BORBR00242 | DEF1_BORBR | Peptide deformylase 1 |
| [B] Bordetella parapertussis | BORPA00241 | DEF1_BORPA | Peptide deformylase 1 |
| [B] Bordetella pertussis | BORPE00505 | DEF2_BORPE | Peptide deformylase 2 |
| [B] Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) | BORPD04645 | A9IFQ3 | Polypeptide deformylase |
| [B] Burkholderia ambifaria (strain MC40-6) | BURA403032 | B1YPX7 | Peptide deformylase |
| [B] Burkholderia cenocepacia (strain AU 1054) | BURCA02487 | Q1BSJ3 | Peptide deformylase |
| [B] Burkholderia cenocepacia (strain HI2424) | BURCH03109 | A0KBJ8 | peptide deformylase KEGG: bcn:Bcen_2513 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase |
| [B] Burkholderia cenocepacia (strain MC0-3) | BURCC03114 | B1K0J6 | Peptide deformylase |
| [B] Burkholderia cepacia (strain ATCC 53795 / AMMD) | BURCM03168 | Q0BAT5 | peptide deformylase KEGG: bur:Bcep18194_A6478 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase |
| [B] Burkholderia cepacia (strain J2315 / LMG 16656) | BURCJ00458 | B4E7V7 | peptide deformylase |
| [B] Burkholderia multivorans (strain ATCC 17616 / 249) | BURM103078 | A9AC70 | Peptide deformylase |
| [B] Burkholderia sp. (strain 383) | BURS303283 | Q39BU4 | Peptide deformylase |
| [B] Burkholderia vietnamiensis (strain G4 / LMG 22486) | BURVG03180 | A4JJ23 | Peptide deformylase |
| [B] Burkholderia mallei | BURMA00112 | A5TRD3 | Polypeptide deformylase |
| [B] Burkholderia mallei (strain NCTC 10229) | BURM902137 | A2S8G8 | Polypeptide deformylase |
| [B] Burkholderia mallei (strain NCTC 10247) | BURM702181 | A3MNP3 | Polypeptide deformylase |
| [B] Burkholderia mallei (strain SAVP1) | BURMS02635 | A1V798 | Polypeptide deformylase |
| [B] Burkholderia phymatum (strain DSM 17167 / STM815) | BURP800033 | B2JJU3 | Peptide deformylase |
| [B] Burkholderia phytofirmans (strain DSM 17436 / PsJN) | BURPP00267 | B2T1K5 | Peptide deformylase |
| [B] Burkholderia pseudomallei | BURPS00123 | A8KKE2 | Peptide deformylase |
| [B] Burkholderia pseudomallei (strain 1106a) | BURP000153 | A3NQ22 | Polypeptide deformylase |
| [B] Burkholderia pseudomallei (strain 1710b) | BURP100334 | Q3JXE2 | peptide deformylase identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 |
| [B] Burkholderia pseudomallei (strain 668) | BURP600149 | A3N4D3 | Polypeptide deformylase |
| [B] Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) | BURTA00125 | Q2T2B2 | peptide deformylase identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 |
| [B] Burkholderia xenovorans (strain LB400) | BURXL00043 | Q147A5 | Peptide deformylase |
| [B] Cupriavidus taiwanensis (strain R1 / LMG 19424) | CUPTR03078 | B3R823 | Peptide deformylase |
| [B] Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) | RALEH03598 | Q0K5G5 | formylmethionine deformylase |
| [B] Polynucleobacter necessarius (strain STIR1) | POLNS01499 | DEF_POLNS | Peptide deformylase |
| [B] Polynucleobacter sp. (strain QLW-P1DMWA-1) | POLSQ02065 | A4T0M6 | Peptide deformylase |
| [B] Ralstonia pickettii (strain 12D) | RALP103272 | C6BI24 | Peptide deformylase |
| [B] Ralstonia pickettii (strain 12J) | RALPJ03564 | B2U797 | Peptide deformylase |
| [B] Polaromonas naphthalenivorans (strain CJ2) | POLNA03802 | A1VU46 | Peptide deformylase |
| [B] Polaromonas sp. (strain JS666 / ATCC BAA-500) | POLSJ04542 | Q122M0 | Peptide deformylase |
| [B] Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) | RHOFD03779 | Q21RP4 | Peptide deformylase |
| [B] Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) | LEPCP00349 | B1XW98 | Peptide deformylase |
| [B] Methylibium petroleiphilum (strain PM1) | METPP00283 | A2SCF6 | Peptide deformylase |
| [B] Herminiimonas arsenicoxydans | HERAR00114 | A4G1G7 | Peptide deformylase |
| [B] Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis) | JANMA00143 | A6SU86 | Polypeptide deformylase |
| [B] Thiobacillus denitrificans (strain ATCC 25259) | THIDA00014 | Q3SMS4 | formylmethionine deformylase |
| [B] Methylobacillus flagellatus (strain KT / ATTC 51484 / DSM 6875) | METFK00187 | Q1H4X9 | Peptide deformylase |
| [B] Methylovorus sp. (strain SIP3-4) | METSD00184 | C6X8G3 | Peptide deformylase |
| [B] Chromobacterium violaceum | CHRVO04258 | DEF_CHRVO | Peptide deformylase |
| [B] Nitrosomonas europaea | NITEU01899 | DEF2_NITEU | Peptide deformylase 2 |
| [B] Nitrosomonas eutropha (strain C71) | NITEC00371 | Q0AJ01 | peptide deformylase KEGG: neu:NE1970 formylmethionine deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase |
| [B] Azoarcus sp. (strain BH72) | AZOSB00099 | A1K1L2 | probable peptide deformylase Probable peptide deformylase (EC 3.5.1.88). Homology to def of E. coli of 54% (sprot|DEF_ECOLI(SRS)). Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions Interpro: Formylmethionine deformylase (IPR000181) Pfam: Polypeptide deformylase Tigrfam: pept_deformyl: polypeptide deformylase no signal peptide no TMHs High confidence in function and specificity |
| [B] Dechloromonas aromatica (strain RCB) | DECAR00021 | Q47K51 | Formylmethionine deformylase |
| [B] Myxococcus xanthus (strain DK 1622) | MYXXD01378 | Q1DCD6 | peptide deformylase identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079 |
| [B] Alteromonas macleodii (strain DSM 17117 / Deep ecotype) | ALTMD00022 | DEF_ALTMD | N-terminal methionine peptide deformylase |
| [B] Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) | MARAV00040 | A1TWN1 | peptide deformylase KEGG: sde:Sde_0021 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase |
| [B] Teredinibacter turnerae (strain ATCC 39867 / T7901) | TERTT00032 | DEF_TERTT | Peptide deformylase |
| [B] Colwellia psychrerythraea (strain 34H / ATCC BAA-681) | COLP300020 | Q48AS8 | identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079 polypeptide deformylase |
| [B] Pseudoalteromonas haloplanktis (strain TAC 125) | PSEHT00023 | DEF_PSEHT | Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9374870; Product type e : enzyme N-terminal methionine peptide deformylase |
| [B] Shewanella baltica (strain OS155 / ATCC BAA-1091) | SHEB500031 | A3CYK5 | Peptide deformylase |
| [B] Shewanella baltica (strain OS185) | SHEB800027 | A6WHB1 | Peptide deformylase |
| [B] Shewanella baltica (strain OS195) | SHEB900031 | A9KUA2 | KEGG: son:SO_0032 polypeptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase peptide deformylase |
| [B] Shewanella baltica (strain OS223) | SHEB200031 | B8E3S4 | Peptide deformylase |
| [B] Shewanella frigidimarina (strain NCIMB 400) | SHEFN00024 | Q08A28 | Peptide deformylase |
| [B] Shewanella halifaxensis (strain HAW-EB4) | SHEHH00027 | B0TLD0 | Peptide deformylase |
| [B] Shewanella loihica (strain BAA-1088 / PV-4) | SHELP03724 | A3QJF4 | peptide deformylase KEGG: son:SO0032 polypeptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase |
| [B] Shewanella oneidensis | SHEON00032 | DEF1_SHEON | Peptide deformylase 1 |
| [B] Shewanella pealeana (strain ANG-SQ1 / ATCC 700345) | SHEPA00027 | A8GYH3 | KEGG: slo:Shew_3736 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase peptide deformylase |
| [B] Shewanella piezotolerans (strain WP3 / JCM 13877) | SHEPW00055 | B8CHB2 | Peptide deformylase |
| [B] Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) | SHEPC00024 | A4Y1C7 | Peptide deformylase |
| [B] Shewanella sediminis (strain HAW-EB3) | SHESH00035 | A8FP75 | KEGG: slo:Shew_3736 peptide deformylase Peptide deformylase |
| [B] Shewanella sp. (strain ANA-3) | SHESA00035 | A0KR61 | peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase KEGG: son:SO0032 polypeptide deformylase |
| [B] Shewanella sp. (strain MR-4) | SHESM00029 | Q0HPA6 | Peptide deformylase |
| [B] Shewanella sp. (strain MR-7) | SHESR00027 | Q0I0S2 | Peptide deformylase |
| [B] Shewanella sp. (strain W3-18-1) | SHESW00024 | A1RDY2 | peptide deformylase KEGG: shm:Shewmr7_0027 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase |
| [B] Shewanella woodyi (strain ATCC 51908 / MS32) | SHEWM00038 | B1KCW4 | Peptide deformylase |
| [B] Baumannia cicadellinicola (subsp. Homalodisca coagulata) | BAUCH00379 | DEF_BAUCH | peptide deformylase identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079 |
| [B] Thioalkalivibrio sp. (strain HL-EbGR7) | THISH00187 | DEF_THISH | Peptide deformylase |
| [B] Buchnera aphidicola subsp. Acyrthosiphon pisum | BUCAI00459 | DEF_BUCAI | Peptide deformylase |
| [B] Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) | BUCA500454 | DEF_BUCA5 | Peptide deformylase |
| [B] Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) | BUCAT00452 | DEF_BUCAT | Peptide deformylase |
| [B] Buchnera aphidicola subsp. Baizongia pistaciae | BUCBP00401 | DEF_BUCBP | Peptide deformylase |
| [B] Escherichia coli O139:H28 (strain E24377A / ETEC) | ECO2404779 | A7ZGN7 | Peptide deformylase |
| [B] Klebsiella pneumoniae (strain 342) | KLEP300426 | DEF_KLEP3 | Peptide deformylase |
| [B] Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) | KLEP703634 | DEF_KLEP7 | Peptide deformylase |
| [B] Erwinia carotovora subsp. atroseptica | ERWCT03963 | DEF_ERWCT | Peptide deformylase |
| [B] Pectobacterium carotovorum subsp. carotovorum (strain PC1) | PECCP03740 | DEF_PECCP | Peptide deformylase |
| [B] Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) | PHOAA04093 | C7BQN5 | Peptide deformylase |
| [B] Photorhabdus luminescens subsp. laumondii | PHOLL04553 | DEF_PHOLL | Peptide deformylase |
| [B] Serratia proteamaculans (strain 568) | SERP504482 | DEF_SERP5 | Peptide deformylase |
| [B] Blochmannia floridanus | BLOFL00206 | DEF_BLOFL | Peptide deformylase |
| [B] Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) | HAMD501455 | DEF_HAMD5 | Peptide deformylase |
| [B] Methylococcus capsulatus | METCA02666 | Q603G3 | Peptide deformylase |
| [B] Hahella chejuensis (strain KCTC 2396) | HAHCH00030 | DEF_HAHCH | peptide deformylase TIGRFAMsMatches:TIGR00079 |
| [B] Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) | CHRSD02848 | DEF_CHRSD | Peptide deformylase |
| [B] Marinomonas sp. (strain MWYL1) | MARMS00017 | A6VR81 | Peptide deformylase |
| [B] Haemophilus influenzae | HAEIN00608 | DEF_HAEIN | Peptide deformylase |
| [B] Haemophilus influenzae (strain 86-028NP) | HAEI800636 | DEF_HAEI8 | PDF; polypeptide deformylase; Similar to: HI0622, DEF_HAEIN peptide deformylase |
| [B] Haemophilus influenzae (strain PittEE) | HAEIE01607 | DEF_HAEIE | Peptide deformylase |
| [B] Haemophilus influenzae (strain PittGG) | HAEIG01017 | DEF_HAEIG | Putative uncharacterized protein |
| [B] Haemophilus parasuis serovar 5 (strain SH0165) | HAEPS01404 | DEF_HAEPS | Peptide deformylase |
| [B] Acinetobacter baumannii (strain AB0057) | ACIB500199 | B7I1X5 | Peptide deformylase |
| [B] Acinetobacter baumannii (strain AB307-0294) | ACIB303279 | B7H283 | Peptide deformylase |
| [B] Acinetobacter baumannii (strain ACICU) | ACIBC00190 | B2I114 | N-formylmethionyl-tRNA deformylase |
| [B] Acinetobacter baumannii (strain AYE) | ACIBY03408 | B0VCB4 | Peptide deformylase 1 |
| [B] Acinetobacter baumannii (strain SDF) | ACIBS00151 | DEF_ACIBS | Peptide deformylase 1 |
| [B] Acinetobacter sp. (strain ADP1) | ACIAD00196 | Q6FFH6 | Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) |
| [B] Psychrobacter arcticus (strain DSM 17307 / 273-4) | PSYA200028 | DEF_PSYA2 | Peptide deformylase |
| [B] Psychrobacter sp. (strain PRwf-1) | PSYWF00042 | DEF_PSYWF | Peptide deformylase |
| [B] Cellvibrio japonicus (strain Ueda107) | CELJU03474 | DEF_CELJU | Peptide deformylase |
| [B] Pseudomonas aeruginosa | PSEAE00019 | DEF_PSEAE | Peptide deformylase |
| [B] Pseudomonas aeruginosa (strain LESB58) | PSEA800019 | B7V0Q4 | Peptide deformylase |
| [B] Pseudomonas aeruginosa (strain PA7) | PSEA700020 | A6UX81 | Peptide deformylase |
| [B] Pseudomonas aeruginosa (strain UCBPP-PA14) | PSEAB00019 | Q02V62 | polypeptide deformylase |
| [B] Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) | PSEF500022 | Q4KKQ9 | identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 polypeptide deformylase |
| [B] Pseudomonas fluorescens (strain PfO-1) | PSEPF00017 | Q3KKE5 | Formylmethionine deformylase |
| [B] Pseudomonas fluorescens (strain SBW25) | PSEFS00018 | C3KE48 | |
| [B] Pseudomonas mendocina (strain ymp) | PSEMY00053 | DEF_PSEMY | Peptide deformylase |
| [B] Pseudomonas stutzeri (strain A1501) | PSEU500021 | DEF_PSEU5 | Polypeptide deformylase |
| [B] Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) | PSE1400017 | Q48QI1 | identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 peptide deformylase |
| [B] Pseudomonas syringae pv. syringae (strain B728a) | PSEU200019 | Q500S9 | Formylmethionine deformylase |
| [B] Pseudomonas syringae pv. tomato | PSESM00160 | DEF1_PSESM | Peptide deformylase 1 |
| [B] Thiomicrospira crunogena (strain XCL-2) | THICR00192 | DEF_THICR | Peptide deformylase |
| [B] Vibrio fischeri (strain MJ11) | VIBFM02553 | DEF_VIBFM | Peptide deformylase |
| [B] Photobacterium profundum | PHOPR03260 | Q6LLJ3 | Putative polypeptide deformylase |
| [B] Vibrio cholerae | VIBCH00046 | DEF1_VIBCH | Peptide deformylase 1 |
| [B] Vibrio cholerae (strain ATCC 39541 / O395) | VIBC302311 | A5F4B3 | Polypeptide deformylase |
| [B] Vibrio cholerae serotype O1 (strain M66-2) | VIBCM00046 | C3LPB9 | |
| [B] Vibrio cholerae serotype O1 (strain MJ-1236) | VIBCJ00461 | C3NTQ1 | Peptide deformylase |
| [B] Vibrio fischeri (strain ATCC 700601 / ES114) | VIBF102531 | DEF_VIBF1 | peptide deformylase |
| [B] Vibrio harveyi (strain ATCC BAA-1116 / BB120) | VIBHB00306 | DEF_VIBHB | Putative uncharacterized protein |
| [B] Vibrio parahaemolyticus | VIBPA03031 | DEF1_VIBPA | Peptide deformylase 1 |
| [B] Vibrio splendidus (strain LGP32) | VIBSL02900 | B7VMX1 | Peptide deformylase |
| [B] Vibrio vulnificus | VIBVU00966 | DEF1_VIBVU | Peptide deformylase 1 |
| [B] Vibrio vulnificus (strain YJ016) | VIBVY03192 | DEF2_VIBVY | Peptide deformylase 2 |
| [B] Stenotrophomonas maltophilia (strain K279a) | STRMK03922 | DEF_STRMK | Putative peptide deformylase |
| [B] Stenotrophomonas maltophilia (strain R551-3) | STRM503566 | DEF_STRM5 | Peptide deformylase |
| [B] Xanthomonas axonopodis pv. citri | XANAC03700 | DEF2_XANAC | Peptide deformylase 2 |
| [B] Xanthomonas campestris pv. campestris | XANCP03644 | DEF2_XANCP | Peptide deformylase 2 |
| [B] Xanthomonas campestris pv. campestris (strain 8004) | XANC803711 | Q4UQ14 | polypeptide deformylase |
| [B] Xanthomonas campestris pv. campestris (strain B100) | XANCB03914 | B0RWQ8 | Peptide deformylase |
| [B] Xanthomonas campestris pv. vesicatoria (strain 85-10) | XANC503837 | Q3BNK6 | peptide deformylase |
| [B] Xanthomonas oryzae (pv. oryzae) | XANOR00510 | Q5H5D1 | identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark polypeptide deformylase |
| [B] Xanthomonas oryzae pv. oryzae (strain MAFF 311018) | XANOM00494 | Q2P826 | polypeptide deformylase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker |
| [B] Xylella fastidiosa | XYLFA00895 | DEF_XYLFA | Peptide deformylase |
| [B] Xylella fastidiosa (strain M12) | XYLFM01700 | DEF_XYLFM | Peptide deformylase |
| [B] Xylella fastidiosa (strain M23) | XYLF201764 | DEF_XYLF2 | Peptide deformylase |
| [B] Xylella fastidiosa (strain Temecula1 / ATCC 700964) | XYLFT01657 | DEF_XYLFT | Peptide deformylase |
| [B] Ruthia magnifica subsp. Calyptogena magnifica | RUTMC00871 | A1AXL8 | Peptide deformylase |