List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 1606
glutamyl-tRNA synthetase
This group has 13 members: 3 [E]ukaryota 10 [B]acteria
Fingerprint: CNAIDDA
| [E] Populus trichocarpa | POPTR39832 | B9HPM4 | jgi|Poptr1_1|803960|fgenesh4_pm.C_LG_IX000007 |
| [E] Arabidopsis thaliana | ARATH26116 | SYE_ARATH | glutamate-tRNA ligase family protein / glutamyl-tRNA synthetase family protein, similar to SP|P22250 from Bacillus subtilis, SP|P22249 from Bacillus stearothermophilus; contains Pfam tRNA synthetases class I (E and Q), catalytic domain PF00749; go_component: cytoplasm [goid GO:0004818@[ISS]; GO:0005739@[IDA]; GO:0006424@[ISS]; GO:0007005@[TAS]; GO:0009507@[IDA]; GO:0009658@[TAS]; GO:0043039@[TAS]; GO:0048481@[IMP]] [evidence IEA]; go_component: mitochondrion [goid GO:0005739] [evidence IEA]; go_function: glutamate-tRNA ligase activity [goid GO:0004818] [evidence ISS] [pmid 2120226]; go_process: tRNA aminoacylation for protein translation [goid GO:0006418] [evidence IEA]; go_process: glutamyl-tRNA aminoacylation [goid GO:0006424] [evidence IEA] glutamate-tRNA ligase |
| [E] Vitis vinifera | VITVI19116 | A7P8T4 | |
| [B] Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) | THEP300324 | SYE1_THEP3 | Glutamyl-tRNA synthetase |
| [B] Thermoanaerobacter sp. (strain X514) | THEPX00807 | SYE1_THEPX | Glutamyl-tRNA synthetase |
| [B] Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) | ACIF202086 | B7J5K9 | Glutamyl-tRNA synthetase |
| [B] Acidithiobacillus ferrooxidans (strain ATCC 53993) | ACIF501784 | SYE2_ACIF5 | Glutamyl-tRNA synthetase |
| [B] Halorhodospira halophila (strain DSM 244 / SL1) | HALHL00107 | SYE1_HALHL | Glutamyl-tRNA synthetase |
| [B] Coxiella burnetii | COXBU01403 | NP_820471.1 | similar to GB:X52882, GB:M26885, GB:M27271, GB:X14983, GB:X14987, SP:P17987, PID:339211, PID:36796, and PID:553729; identified by sequence similarity; putative glutamyl-tRNA synthetase |
| [B] Coxiella burnetii (strain CbuG_Q212) | COXB200453 | SYE1_COXB2 | Glutamyl-tRNA synthetase 1 |
| [B] Coxiella burnetii (strain Dugway 5J108-111) | COXBN00497 | SYE1_COXBN | Glutamyl-tRNA synthetase |
| [B] Coxiella burnetii (strain RSA 331 / Henzerling II) | COXBR01373 | SYE2_COXBR | Glutamyl-tRNA synthetase |
| [B] Methylococcus capsulatus | METCA00485 | SYE1_METCA | identified by similarity to SP:P22250; match to protein family HMM PF00749; match to protein family HMM TIGR00464 glutamyl-tRNA synthetase |