List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 228377

beta subunit
This group has 21 members: 21 [B]acteria
Fingerprint: ARRTICV

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Mycobacterium avium (strain 104)MYCA103314  UniProtKB/TrEMBL A0QIF4  Ring hydroxylating beta subunit identified by match to protein family HMM PF00866
[B] Mycobacterium paratuberculosisMYCPA02705  UniProtKB/TrEMBL Q73WC5  hypothetical protein
[B] Mycobacterium gilvum (strain PYR-GCK)MYCGI00624  UniProtKB/TrEMBL A4T577  aromatic-ring-hydroxylating dioxygenase, beta subunit PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit KEGG: mva:Mvan_0464 aromatic-ring-hydroxylating dioxygenase, beta subunit
[B] Mycobacterium sp. (strain JLS)MYCSJ01576  UniProtKB/TrEMBL A3PWW7  aromatic-ring-hydroxylating dioxygenase, beta subunit PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit KEGG: mmc:Mmcs_1623 aromatic-ring-hydroxylating dioxygenase, beta subunit
[B] Mycobacterium sp. (strain KMS)MYCSK01624  UniProtKB/TrEMBL A1UDE7  aromatic-ring-hydroxylating dioxygenase, beta subunit PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit KEGG: mmc:Mmcs_1623 aromatic-ring-hydroxylating dioxygenase, beta subunit
[B] Mycobacterium sp. (strain MCS)MYCSS01600  UniProtKB/TrEMBL Q1BBK0  Aromatic-ring-hydroxylating dioxygenase, beta subunit
[B] Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)MYCVP00454  UniProtKB/TrEMBL A1T2B1  aromatic-ring-hydroxylating dioxygenase, beta subunit PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit KEGG: mmc:Mmcs_1623 aromatic-ring-hydroxylating dioxygenase, beta subunit
[B] Rhodococcus sp. (strain RHA1)RHOSR08498  UniProtKB/TrEMBL Q68YB5  Terminal oxygenase small subunit of phthalate dioxygenase
[B] Arthrobacter sp. (strain FB24)ARTS204347  UniProtKB/TrEMBL A0AWN1  aromatic-ring-hydroxylating dioxygenase, beta subunit PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit KEGG: mpa:MAP2735 hypothetical protein
[B] Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2)THERP02261  UniProtKB/TrEMBL B9L3H6  3-phenylpropionate dioxygenase subunit beta
[B] Caulobacter sp. (strain K31)CAUSK01873  UniProtKB/TrEMBL B0T5N7  Aromatic-ring-hydroxylating dioxygenase beta subunit
[B] Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks)ECOLC01103  UniProtKB/Swiss-Prot HCAF_ECOLC  Aromatic-ring-hydroxylating dioxygenase beta subunit
[B] Escherichia coli (strain SMS-3-5 / SECEC)ECOSM02592  UniProtKB/Swiss-Prot HCAF_ECOSM  3-phenylpropionate dioxygenase beta subunit
[B] Escherichia coli O157:H7ECO5703197  UniProtKB/Swiss-Prot HCAF_ECO57  Residues 1 to 172 of 172 are 99.41 pct identical to residues 1 to 172 of 172 from Escherichia coli K-12 Strain MG1655: B2539 small terminal subunit of phenylpropionate dioxygenase
[B] Escherichia coli O157:H7 (strain EC4115 / EHEC)ECO5E03207  UniProtKB/Swiss-Prot HCAF_ECO5E  3-phenylpropionate dioxygenase beta subunit
[B] Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)ECOLU02789  UniProtKB/Swiss-Prot HCAF_ECOLU  3-phenylpropionate dioxygenase, small (Beta) subunit
[B] Escherichia coli O7:K1 (strain IAI39 / ExPEC)ECO7I02592  UniProtKB/Swiss-Prot HCAF_ECO7I  3-phenylpropionate dioxygenase, small (Beta) subunit
[B] Escherichia coli O9:H4 (strain HS)ECOHS02498  UniProtKB/Swiss-Prot HCAF_ECOHS  3-phenylpropionate dioxygenase beta subunit
[B] Photorhabdus luminescens (subsp. laumondii)PHOLL02144  UniProtKB/Swiss-Prot HCAF_PHOLL  3-phenylpropionate dioxygenase beta subunit (digoxigenin beta subunit)
[B] Shigella boydii serotype 4 (strain Sb227)SHIBS02081  UniProtKB/Swiss-Prot HCAF_SHIBS  Code: Q; COG: COG5517 small terminal subunit of phenylpropionate dioxygenase
[B] Shigella flexneriSHIFL02317  UniProtKB/Swiss-Prot HCAF_SHIFL  Residues 1 to 172 of 172 are 99 pct identical to residues 1 to 172 of a 172 aa protein from Escherichia coli K12 ref: NP_417034.1 small terminal subunit of phenylpropionate dioxygenase