List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 278233

identified by match to protein family
This group has 11 members: 11 [B]acteria
Fingerprint: ANTFSYW

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Salinispora arenicola (strain CNS-205)SALAI01052  UniProtKB/TrEMBL A8M5B7  Glycoside hydrolase family 85
[B] Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)SALTO01173  UniProtKB/TrEMBL A4X460  Glycoside hydrolase, family 85 precursor
[B] Bifidobacterium longumBIFLO00171  UniProtKB/TrEMBL Q8G4P3  Probable endo-beta-N-acetylglucosaminidase; di-N- acetylchitobiosyl beta-N-acetylglucosaminidase
[B] Bifidobacterium longum (strain DJO10A)BIFLD00190  UniProtKB/TrEMBL B3DQP7  Endo-beta-N-acetylglucosaminidase D
[B] Clostridium perfringensCLOPE00289  UniProtKB/TrEMBL Q8XNP3  Endo-beta-N-acetylglucosaminidase
[B] Clostridium perfringens (strain ATCC 13124 / NCTC 8237)CLOP100270  UniProtKB/TrEMBL Q0TUE5  endo-beta-N-acetylglucosaminidase identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF00801; match to protein family HMM PF03644; match to protein family HMM TIGR01167
[B] Clostridium perfringens (strain SM101)CLOPS00257  UniProtKB/TrEMBL Q0SW91  Glycosyl hydrolase family 85 family identified by match to protein family HMM PF03644
[B] Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)CLOPH01689  UniProtKB/TrEMBL A9KRL2  Glycoside hydrolase family 85 precursor
[B] Lactobacillus plantarumLACPL00150  UniProtKB/TrEMBL Q88ZW2  mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
[B] Thermosipho africanus (strain TCF52B)THEAB01232  UniProtKB/TrEMBL B7ICL3  Endo-beta-N-acetylglucosaminidase
[B] Thermosipho melanesiensis (strain BI429 / DSM 12029)THEM400994  UniProtKB/TrEMBL A6LLS6  Glycoside hydrolase, family 85 precursor