List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 268984

family 19 KEGG: mmc:Mmcs_3355 chitinase
This group has 9 members: 5 [E]ukaryota 4 [B]acteria
Fingerprint: ANHETIK

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Oryza sativaORYSA05576   BAF09287.1  Chitinase (EC 3.2.1.14) A contains InterPro domain(s): IPR001002, IPR000726 has GO asignment(s): GO:0004568, GO:0006032, GO:0008061, GO:0009613, GO:0016998 similar to Q7M1Q9 supported by AK064754
[E] Sorghum bicolorSORBI02111  UniProtKB/TrEMBL C5XX83  jgi|Sorbi1|148667|estExt_fgenesh1_kg.C_chr_40224
[E] Populus trichocarpaPOPTR06561   gw1.142.209.1  jgi|Poptr1_1|270686|gw1.142.209.1
[E] Arabidopsis thalianaARATH15363  UniProtKB/TrEMBL Q9M2U5  class IV chitinase (CHIV), almost identical to class IV chitinase from GI:2597826 (Arabidopsis thaliana); go_component: endomembrane system [goid GO:0004568@[ISS]; GO:0005618@[IDA]; GO:0009626@[TAS]; GO:0010262@[IEP]; GO:0012505@[NR]] [evidence IEA]; go_function: chitinase activity [goid GO:0004568] [evidence ISS]; go_function: chitinase activity [goid GO:0004568] [evidence ISS] [pmid 11525512]; go_process: hypersensitive response [goid GO:0009626] [evidence TAS] [pmid 9426222] ATEP3; chitinase
[E] Vitis viniferaVITVI02784  UniProtKB/TrEMBL A7QAP6  
[B] Mycobacterium sp. (strain JLS)MYCSJ03301  UniProtKB/TrEMBL A3Q1W7  Chitinase PFAM: glycoside hydrolase, family 19 KEGG: mmc:Mmcs_3355 chitinase
[B] Mycobacterium sp. (strain KMS)MYCSK03344  UniProtKB/TrEMBL A1UIF3  Chitinase PFAM: glycoside hydrolase, family 19 KEGG: mmc:Mmcs_3355 chitinase
[B] Mycobacterium sp. (strain MCS)MYCSS03319  UniProtKB/TrEMBL Q1B6M2  Chitinase
[B] Streptomyces coelicolorSTRCO00467  UniProtKB/TrEMBL Q8CK55  SCF80.03, secreted chitinase, partial CDS, len:> 187 aa. Previously sequenced and characterised. Streptomyces coelicolor TR:Q9Z9M4 (EMBL; AB017013) chiG (fragment) (244 aa), fasta scores opt: 1238 z-score: 1463.2 E():0 98.9% identity in 187 aa overlap. Contains a possible N-terminal signal sequence and a Pfam match to entry PF00182 Glyco_hydro_19, Chitinases class I. SCF34.01, chiG, chitinase, partial CDS, len: >90 aa; identical to the C-terminus of TR:Q9Z9M4 (EMBL:AB017013), chiG, Streptomyces coelicolor chitinase (fragment) (244 aa), fasta scores; opt: 638 z-score: 812.8 E(): 0, 100.0% identity in 90 aa overlap. Highly similar to SC5H1.29c (EMBL:AL049863), chiF, Streptomyces coelicolor chitinase (296 aa) (81.1% identity in 90 aa overlap). Contains Pfam match to entry PF00182 Glyco_hydro_19, Chitinases class I secreted chitinase