List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 185054

family 43
This group has 13 members: 1 [E]ukaryota 12 [B]acteria
Fingerprint: ALITNDM

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Phaeosphaeria nodorumPHANO15287   SNU11088.1  hypothetical protein
[B] Bacteroides thetaiotaomicronBACTN00366  UniProtKB/TrEMBL Q8AAU5  Endo-1,4-beta-xylanase D
[B] Gramella forsetii (strain KT0803)GRAFK00678  UniProtKB/TrEMBL A0LZ75  glycosyl hydrolase, family 43-possibly xylosid ase/arabinosidase
[B] Clostridium acetobutylicumCLOAB03782  UniProtKB/TrEMBL Q97TI6  Endo-1,4-beta-xylanase XynD B.subtilis ortholog (family 43 glycosyl hydrolase and cellulose-binding domain)
[B] Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)SACD200782  UniProtKB/TrEMBL Q21MM8  endo-1,4-beta-xylanase D precursor
[B] Idiomarina loihiensisIDILO00081  UniProtKB/TrEMBL Q5QZY8  Xylosidase/arabinosidase
[B] Shewanella baltica (strain OS223)SHEB202075  UniProtKB/TrEMBL B8EEN8  Glycoside hydrolase family 43
[B] Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)SHEPC02025  UniProtKB/TrEMBL A4Y751  Glycoside hydrolase, family 43 precursor
[B] Shewanella sp. (strain ANA-3)SHESA02047  UniProtKB/TrEMBL A0KWY0  glycoside hydrolase, family 43 PFAM: glycoside hydrolase, family 43 KEGG: sde:Sde_0789 endo-1,4-beta-xylanase D precursor
[B] Shewanella sp. (strain MR-4)SHESM01968  UniProtKB/TrEMBL Q0HIR2  Glycoside hydrolase, family 43 precursor
[B] Shewanella sp. (strain MR-7)SHESR01968  UniProtKB/TrEMBL Q0HV74  Glycoside hydrolase, family 43 precursor
[B] Shewanella sp. (strain W3-18-1)SHESW01905  UniProtKB/TrEMBL A1RJD9  glycoside hydrolase, family 43 PFAM: glycoside hydrolase, family 43 KEGG: she:Shewmr4_1982 glycoside hydrolase, family 43
[B] Cellvibrio japonicus (strain Ueda107)CELJU02911  UniProtKB/TrEMBL B3PD60  Beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N