List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 269070

chitinase C
This group has 3 members: 3 [B]acteria
Fingerprint: AGQAAYY

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)SALTO04334  UniProtKB/TrEMBL A4XD26  Chitinase precursor
[B] Streptomyces coelicolorSTRCO07215  UniProtKB/TrEMBL Q9S6T0  SC5H1.29c, chiF, chitinase, len: 296 aa; previously sequenced as chiF (EMBL:AB017012) and similar to many e.g. TR:O50152 (EMBL:AB009289), chiC, Streptomyces griseus chitinase C (294 aa), fasta scores; opt: 1308 z-score: 1506.5 E(): 0, 65.8% identity in 295 aa overlap. Contains possible N-terminal signal sequence. Contains Pfam match to entry PF00182 chitinase_1, Chitinases class I, score 247.20, E-value 2.2e-70 chitinase
[B] Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)STRGG03273  UniProtKB/TrEMBL B1VMB9  Chitinase C