List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 359041

type II site-specific deoxyribonuclease
This group has 6 members: 6 [B]acteria
Fingerprint: AGADEHW

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Roseiflexus castenholzii (strain DSM 13941 / HLO8)ROSCS00399  UniProtKB/TrEMBL A7NGF3  Type II site-specific deoxyribonuclease KEGG: ana:all3631 type II site-specific deoxyribonuclease
[B] Cyanothece (strain ATCC 51142)CYAA501058  UniProtKB/TrEMBL B1WTV7  Probable type II site-specific deoxyribonuclease
[B] Microcystis aeruginosa (strain NIES-843)MICAN04933  UniProtKB/TrEMBL B0JY57  AvaI restriction endonuclease-homolog
[B] Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)SYNP201171  UniProtKB/TrEMBL B1XKE2  Type II site-specific deoxyribonuclease
[B] Anabaena variabilis (strain ATCC 29413 / PCC 7937)ANAVT03114  UniProtKB/TrEMBL Q3M898  type II site-specific deoxyribonuclease
[B] Anabaena sp. (strain PCC 7120)ANASP03593  UniProtKB/Swiss-Prot T2A1_ANASP  Type-2 restriction enzyme AvaI