List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 54153

chitinase
This group has 5 members: 5 [B]acteria
Fingerprint: ADFHIAM

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Phytoplasma sp. (strain STRAWB1)STRAW02584  UniProtKB/TrEMBL Q82K19  Putative secreted chitinase A
[B] Streptomyces coelicolorSTRCO05638  UniProtKB/TrEMBL O86826  SC8B7.05c, chiB, secreted chitinase, len: 610 aa; almost identical to S. lividans TR:D1026067 (EMBL:D84193) chitinase ChiB (EC 3.2.1.14) (610 aa), 99.3% identity in 610 aa overlap, and highly similar to many e.g. CHIX_STROI Streptomyces olivaceoviridis exochitinase 1 precursor (EC 3.2.1.14) ( 597 aa), fasta scores; opt: 3484 z-score: 2485.6 E(): 0, 86.1% identity in 596 aa overlap. Contains PS01095 Chitinases family 18 active site. Contains possible N-terminal region signal peptide sequence secreted chitinase
[B] Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)STRGG01704  UniProtKB/TrEMBL B1VYQ5  Chitinase II
[B] Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)BREBN00293  UniProtKB/TrEMBL C0ZIQ2  Putative chitinase D
[B] Myxococcus xanthus (strain DK 1622)MYXXD05775  UniProtKB/TrEMBL Q1CZN0  chitinase, class II identified by similarity to GB:AAK69033.1; match to protein family HMM PF00041; match to protein family HMM PF00704; match to protein family HMM PF02839