List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 212937

Glycoside hydrolase family 4
This group has 12 members: 12 [B]acteria
Fingerprint: TICAGGI

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Rhizobium lotiRHILO05038  UniProtKB/TrEMBL Q989F8  alpha-galactosidase
[B] Agrobacterium radiobacter (strain K84 / ATCC BAA-868)AGRRK05712  UniProtKB/TrEMBL B9JKX1  Alpha-galactosidase (Melibiase) protein
[B] Agrobacterium tumefaciens (strain C58 / ATCC 33970)AGRT504375  UniProtKB/TrEMBL Q7CVI8  Alpha-galactosidase
[B] Rhizobium etli (strain CFN 42 / ATCC 51251)RHIEC04695  UniProtKB/TrEMBL Q2K084  alpha-galactosidase (melibiase) protein Similar to agaL1 (SMb21648) [Sinorhizobium meliloti] and mlr6443 [Mesorhizobium loti] Similar to entrez-protein:Q9X4Y0 Putative location:bacterial cytoplasm Psort-Score: 0.0830; go_component: extrachromosomal DNA [goid 0046821]; go_function: hydrolase activity, acting on glycosyl bonds [goid 0016798]; go_function: hydrolase activity, hydrolyzing O-glycosyl compounds [goid 0004553]; go_function: hydrolase activity [goid 0016787]; go_function: magnesium ion binding [goid 0000287]; go_function: alpha-galactosidase activity [goid 0004557]; go_process: carbohydrate metabolism [goid 0005975]
[B] Rhizobium etli (strain CIAT 652)RHIE605440  UniProtKB/TrEMBL B3Q186  Alpha-galactosidase protein
[B] Rhizobium leguminosarum bv. trifolii (strain WSM2304)RHILW05765  UniProtKB/TrEMBL B6A3U6  Glycoside hydrolase family 4
[B] Rhizobium leguminosarum bv. viciae (strain 3841)RHIL305759  UniProtKB/TrEMBL Q1M6E4  putative alpha-galactosidase similarity:fasta; SWALL:AGAL_RHIME (SWALL:Q9X4Y0); Rhizobium meliloti; alpha-galactosidase; melA; length 490 aa; 484 aa overlap; query 2-485 aa; subject 3-485 aa similarity:fasta; SWALL:Q989F8 (EMBL:AP003009); Rhizobium loti; alpha-galactosidase; length 488 aa; 487 aa overlap; query 1-487 aa; subject 1-487 aa
[B] Rhizobium melilotiRHIME04850  UniProtKB/Swiss-Prot AGAL_RHIME  alpha-galactosidase (melibiase) protein
[B] Sinorhizobium medicae (strain WSM419)SINMW04059  UniProtKB/TrEMBL A6UH14  Glycoside hydrolase family 4
[B] Thermotoga maritimaTHEMA00742  UniProtKB/TrEMBL Q9WZL1  Alpha-glucosidase, putative
[B] Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)THEP100177  UniProtKB/TrEMBL A5IJ33  Glycoside hydrolase, family 4
[B] Thermotoga sp. (strain RQ2)THESQ00174  UniProtKB/TrEMBL B1L7V5  Glycoside hydrolase family 4