List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 217221

Choline dehydrogenase
This group has 26 members: 26 [B]acteria
Fingerprint: MATEQDW

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Methylobacterium nodulans (strain ORS2060 / LMG 21967)METNO07308  UniProtKB/TrEMBL B8IVT3  Choline dehydrogenase
[B] Jannaschia sp. (strain CCS1)JANSC01488  UniProtKB/TrEMBL Q28SA3  choline dehydrogenase
[B] Silicibacter pomeroyiSILPO01063  UniProtKB/TrEMBL Q5LUG6  identified by similarity to SP:P54223; match to protein family HMM PF00732; match to protein family HMM PF05199; match to protein family HMM TIGR01810 choline dehydrogenase
[B] Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)CITK802503  UniProtKB/Swiss-Prot BETA_CITK8  Choline dehydrogenase
[B] Serratia proteamaculans (strain 568)SERP501503  UniProtKB/Swiss-Prot BETA_SERP5  Choline dehydrogenase
[B] Acinetobacter baumannii (strain AB0057)ACIB500962  UniProtKB/Swiss-Prot BETA_ACIB5  Choline dehydrogenase
[B] Acinetobacter baumannii (strain AB307-0294)ACIB302636  UniProtKB/Swiss-Prot BETA_ACIB3  Choline dehydrogenase
[B] Acinetobacter baumannii (strain ACICU)ACIBC00884  UniProtKB/Swiss-Prot BETA_ACIBC  Choline dehydrogenase
[B] Acinetobacter baumannii (strain AYE)ACIBY02658  UniProtKB/Swiss-Prot BETA_ACIBY  Choline dehydrogenase, a flavoprotein
[B] Acinetobacter baumannii (strain SDF)ACIBS02114  UniProtKB/Swiss-Prot BETA_ACIBS  Choline dehydrogenase, a flavoprotein
[B] Psychrobacter arcticus (strain DSM 17307 / 273-4)PSYA200715  UniProtKB/TrEMBL Q4FTS6  Putative choline dehydrogenase
[B] Pseudomonas aeruginosaPSEAE05359  UniProtKB/Swiss-Prot BETA_PSEAE  Choline dehydrogenase
[B] Pseudomonas aeruginosa (strain LESB58)PSEA805739  UniProtKB/Swiss-Prot BETA_PSEA8  Choline dehydrogenase
[B] Pseudomonas aeruginosa (strain PA7)PSEA706032  UniProtKB/Swiss-Prot BETA_PSEA7  Choline dehydrogenase
[B] Pseudomonas entomophila (strain L48)PSEE400335  UniProtKB/Swiss-Prot BETA_PSEE4  choline dehydrogenase Evidence 2b : Function of strongly homologous gene; Product type e : enzyme
[B] Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)PSEF505672  UniProtKB/Swiss-Prot BETA_PSEF5  identified by match to protein family HMM PF00732; match to protein family HMM PF05199; match to protein family HMM TIGR01810 choline dehydrogenase
[B] Pseudomonas fluorescens (strain PfO-1)PSEPF05229  UniProtKB/Swiss-Prot BETA_PSEPF  Choline dehydrogenase
[B] Pseudomonas mendocina (strain ymp)PSEMY00468  UniProtKB/Swiss-Prot BETA_PSEMY  Choline dehydrogenase
[B] Pseudomonas putida (strain F1 / ATCC 700007)PSEP104873  UniProtKB/Swiss-Prot BETA_PSEP1  Choline dehydrogenase
[B] Pseudomonas putida (strain W619)PSEPW00401  UniProtKB/TrEMBL B1J2K8  Choline dehydrogenase
[B] Pseudomonas stutzeri (strain A1501)PSEU501691  UniProtKB/TrEMBL A4VKC3  Choline dehydrogenase
[B] Xanthomonas axonopodis (pv. citri)XANAC00706  UniProtKB/Swiss-Prot BETA_XANAC  identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark choline dehydrogenase
[B] Xanthomonas campestris pv. campestrisXANCP03306  UniProtKB/Swiss-Prot BETA_XANCP  Choline dehydrogenase
[B] Xanthomonas campestris pv. campestris (strain 8004)XANC800729  UniProtKB/Swiss-Prot BETA_XANC8  choline dehydrogenase
[B] Xanthomonas campestris pv. campestris (strain B100)XANCB00786  UniProtKB/Swiss-Prot BETA_XANCB  Choline dehydrogenase
[B] Xanthomonas campestris pv. vesicatoria (strain 85-10)XANC500756  UniProtKB/Swiss-Prot BETA_XANC5  choline dehydrogenase