List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 213947

family 1
This group has 11 members: 11 [A]rchaea
Fingerprint: YQPFFAL

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[A] Desulfurococcus kamchatkensis (strain 1221n / DSM 18924)DESK100250  UniProtKB/TrEMBL B8D332  Glycoside hydrolase, family 1
[A] Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)STAMF01368  UniProtKB/TrEMBL A3DPC2  Glycoside hydrolase, family 1
[A] Caldivirga maquilingensis (strain DSMZ 13496 / IC-167)CALMQ01505  UniProtKB/TrEMBL A8M9E1  Glycoside hydrolase family 1 precursor
[A] Pyrobaculum aerophilumPYRAE01197  UniProtKB/TrEMBL Q8ZWK9  Beta-glucosidase
[A] Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)PYRAR00709  UniProtKB/TrEMBL A4WIW0  Glycoside hydrolase, family 1
[A] Pyrobaculum calidifontis (strain JCM 11548 / VA1)PYRCJ00616  UniProtKB/TrEMBL A3MTT9  Glycoside hydrolase, family 1
[A] Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)PYRIL01673  UniProtKB/TrEMBL A1RV77  Glycoside hydrolase, family 1
[A] Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)THENV00707  UniProtKB/TrEMBL B1YD03  Glycoside hydrolase family 1
[A] Pyrococcus furiosusPYRFU00436  UniProtKB/TrEMBL Q9HHB3  Beta-glucosidase
[A] Pyrococcus horikoshiiPYRHO00379  UniProtKB/TrEMBL O58104  423aa long hypothetical beta-glucosidase
[A] Thermococcus kodakaraensisPYRKO01821  UniProtKB/TrEMBL Q5JDV2  membrane-bound beta-glycosidase, GH1 family