List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 234394

CONSERVED ATP-BINDING PROTEIN ABC TRANSPORT
This group has 23 members: 23 [B]acteria
Fingerprint: IQYPGAG

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)MYCA903474  UniProtKB/TrEMBL B1MEX3  Putative ABC transporter, ATP-binding protein
[B] Mycobacterium gilvum (strain PYR-GCK)MYCGI04548  UniProtKB/TrEMBL A4TFE8  ABC-1 domain protein PFAM: ABC-1 domain protein KEGG: mmc:Mmcs_1411 ABC-1
[B] Mycobacterium lepraeMYCLE00637  UniProtKB/TrEMBL Q9CCM8  Similar to M. tuberculosis Rv3197, putative ABC transporter, TR:O53343 (EMBL:AL123456) (447 aa); Fasta score E(): 0, 83.0% identity in 447 aa overlap. Similar to many ABC1-like hypothetical proteins from bacteria and eukaryotes. Similar to Saccharomyces cerevisiae ABC1, ABC1 protein precursor, SW:ABC1_YEAST (P27697) (501 aa); Fasta score E(): 7.3e-19, 24.9% identity in 382 aa overlap. Previously sequenced as TR:Q49747 (EMBL:U00016) (267 aa); Fasta score E(): 0, 99.6% identity in 248 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Similar to ML1898 conserved hypothetical protein
[B] Mycobacterium leprae (strain Br4923)MYCLB00633  UniProtKB/TrEMBL B8ZUT8  Putative uncharacterized protein
[B] Mycobacterium marinum (strain ATCC BAA-535 / M)MYCMM01349  UniProtKB/TrEMBL B2HFI0  Conserved ATP-binding protein ABC transporter
[B] Mycobacterium bovisMYCBO03209  UniProtKB/TrEMBL Q7TX17  Mb3220, -, len: 447 aa. Equivalent to Rv3197, len: 447 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 447 aa overlap). Probable conserved ATP-binding protein ABC transporter, highly similar to Mycobacterium leprae proteins: Q9CCM8|ML0640 HYPOTHETICAL PROTEIN (473 aa), FASTA scores: opt: 2512, E(): 2.1e-140, (83.0% identity in 447 aa overlap). Interestingly, the N-terminal half (1-219 aa) corresponds to Q49747|ABC1|B1937_C3_233 ABC1 PROTEIN from Mycobacterium leprae (267 aa), FASTA scores: opt: 1276, E(): 6.3e-68, (88.6% identity in 219 aa overlap); and the C-terminal half (239-447 aa) corresponds to Q49745|B1937_C2_179 HYPOTHETICAL 23.1 KDA PROTEIN (206 aa), FASTA scores: opt: 1138, E(): 6.5e-60, (77.05% identity in 209 aa overlap); two adjacent orfs from Mycobacterium leprae. Also highly similar to other proteins (generally ABC transporters) e.g. Q9FCJ6|2SC3B6.16c HYPOTHETICAL 51.3 KDA PROTEIN from Streptomyces coelicolor (469 aa), FASTA scores: opt: 1340, E(): 1.8e-71, (45.9% identity in 449 aa overlap); O65576|ABC1AT ABC1 PROTEIN (alias Q9SBB2|T15B16.14|AT4G01660 PUTATIVE ABC TRANSPORTER) from Arabidopsis thaliana (Mouse-ear cress) (623 aa), FASTA scores: opt: 543, E(): 1.7e-24, (28.4% identity in 405 aa overlap); O27682|MTH1645 ABC TRANSPORTER from Methanobacterium thermoautotrophicum (623 aa), FASTA scores: opt: 497, E(): 7.8e-22, (33.0% identity in 309 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE ATP-BINDING TRANSPORT PROTEIN FAMILY (ABC TRANSPORTERS). PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER
[B] Mycobacterium bovis (strain BCG / Paris 1173P2)MYCBP03193  UniProtKB/TrEMBL A1KNJ3  Probable conserved ATP-binding protein ABC transporter
[B] Mycobacterium tuberculosisMYCTU04310  UniProtKB/TrEMBL A2VNZ3  PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER
[B] Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)MYCTA03259  UniProtKB/TrEMBL A5U7L5  ABC transporter ATP-binding protein
[B] Mycobacterium tuberculosis (strain F11)MYCTF03130  UniProtKB/TrEMBL A5WSA4  hypothetical protein similar to conserved ATP-binding protein ABC transporter Mapped to H37Rv Rv3197
[B] Mycobacterium ulcerans (strain Agy99)MYCUA02044  UniProtKB/TrEMBL A0PR84  conserved ATP-binding protein ABC transporter thought to be involved in active transport across the membrane. responsible for energy coupling to the transport system.
[B] Nocardia farcinicaNOCFA04537  UniProtKB/TrEMBL Q5YR09  putative ATP-binding protein
[B] Rhodococcus opacus (strain B4)RHOOB06440  UniProtKB/TrEMBL C1B1J7  Putative uncharacterized protein
[B] Rhodococcus sp. (strain RHA1)RHOSR06296  UniProtKB/TrEMBL Q0S2S5  Putative uncharacterized protein
[B] Acidothermus cellulolyticus (strain ATCC 43068 / 11B)ACIC101765  UniProtKB/TrEMBL A0LVT1  ABC-1 domain protein PFAM: ABC-1 domain protein KEGG: fra:Francci3_3788 ABC-1
[B] Frankia sp. (strain CcI3)FRASC03677  UniProtKB/TrEMBL Q2J6F3  ABC-1
[B] Frankia sp. (strain EAN1pec)FRASN00917  UniProtKB/TrEMBL A8L2K1  ABC-1 domain protein
[B] Salinispora arenicola (strain CNS-205)SALAI03901  UniProtKB/TrEMBL A8M3E4  ABC-1 domain protein
[B] Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)SALTO03671  UniProtKB/TrEMBL A4XB68  ABC-1 domain protein
[B] Nocardioides sp. (strain BAA-499 / JS614)NOCSJ00932  UniProtKB/TrEMBL A1SFA2  ABC-1 domain protein
[B] Phytoplasma sp. (strain STRAWB1)STRAW03067  UniProtKB/TrEMBL Q82IR5  Putative ABC transporter ATP-binding protein
[B] Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)LEPBJ01937  UniProtKB/TrEMBL Q04QT3  Protein kinase inner membrane protein
[B] Leptospira borgpetersenii serovar Hardjo-bovis (strain L550)LEPBL00706  UniProtKB/TrEMBL Q053U6  Protein kinase inner membrane protein